Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|213617712|gb|DB967579.1|DB967579EST: GAATCAAACCCGGCGACGTCATCGCTCTCACCTTCCCCAATACCGTCGAG TTTGTTGTCTTGTTTCTAGCCGTCATTCGAGTGCGCGCCACAGCCGCGCCG
genomic: GAATCAAACCCGGCGACGTCATCGCTCTCACCTTCCCCAATACCGTCGAGgtaattcttt ... ttcattgcagTTTGTTGTCTTGTTTCTAGCCGTCATTCGAGTGCGCGCCACAGCCGCGCCG
EST:
gi|19347069|gb|BM891949.1|BM891949EST: GAATCAAACCCGGCGACGTCATCGCTCTCACCTTCCCCAATACCGTCGAG TTTGTTGTCTTGTTTCTAGCCGTCATTCGAGTGCGCGCCACAGCCGCGCCG
genomic: GAATCAAACCCGGCGACGTCATCGCTCTCACCTTCCCCAATACCGTCGAGgtaattcttt ... ttcattgcagTTTGTTGTCTTGTTTCTAGCCGTCATTCGAGTGCGCGCCACAGCCGCGCCG
EST:
gi|209708569|gb|BW668182.1|BW668182EST: GAATCAAACCCGGCGACGTCATCGCTCTCACCTTCCCCAATACCGTCGAG TTTGTTGTCTTGTTTCTAGCCGTCATTCGAGTGCGCGCCACAGCCGCGCCG
genomic: GAATCAAACCCGGCGACGTCATCGCTCTCACCTTCCCCAATACCGTCGAGgtaattcttt ... ttcattgcagTTTGTTGTCTTGTTTCTAGCCGTCATTCGAGTGCGCGCCACAGCCGCGCCG
EST:
gi|37996236|gb|CF807825.1|CF807825EST: GAATCAAACCCGGCGACGTCATCGCTCTCACCTTCCCCAATACCGTCGAG TTTGTTGTCTTGTTTCTAGCCGTCATTCGAGTGCGCGCCACAGCCGCGCCG
genomic: GAATCAAACCCGGCGACGTCATCGCTCTCACCTTCCCCAATACCGTCGAGgtaattcttt ... ttcattgcagTTTGTTGTCTTGTTTCTAGCCGTCATTCGAGTGCGCGCCACAGCCGCGCCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacgttagaaaataaggtagagtaaccttttttttttttttctgtttcattgcagTTTGTTGTCTTGTTTCTAGCCGTCATTCGAGTGCGCGCCACAGCCGCGCCGTTAAACGCGGCTTACACAGCCGAAGAGTTTGAGTTTTACTTGTCCGACT
gagtaac putative branch site (score: 2)
cctttttttttttttt CT-rich tract
ttttttttttttttct TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
agctgcggtaataattattacatagaatcatataataaattttcgtacgttagaaaataaggtagagtaaccttttttttttttttctgtttcattgcagTTTGTTGTCTTGTTTCTAGCCGTCATTCGAGTGCGCGCCACAGCCGCGCCGTTAAACGCGGCTTACACAGCCGAAGAGTTTGAGTTTTACTTGTCCGACT
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