1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tttctttctttcttttcaaattattatgaataattttcttgtgggtttgatttgatgaaagtggaatcggcactcatttgatttgatctttgctgtgtagTCGGTATTTGGTGGACTATTGCTATAAGGAAGATGAAGATAATGAATTGATATATTCAAGGGAGGTGAAGCCTCTTGTGTCTGCAGCTTTTGATGGTCAT
species | Glycine max |
transcript | GLYMA09G25160.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGCGAAAATTTGGATGATGTCACCATTTCCTTCGGAGATCAATCTTCCAG TCGGTATTTGGTGGACTATTGCTATAAGGAAGATGAAGATAATGAATTGATEST: gi|193320693|gb|FK286536.1|FK286536
genomic: CGCGAAAATTTGGATGATGTCACCATTTCCTTCGGAGATCAATCTTCCAGgtattgttat ... tgctgtgtagTCGGTATTTGGTGGACTATTGCTATAAGGAAGATGAAGATAATGAATTGAT
EST: CGCGAAAATTTGGATGATGTCACCATTTCCTTCGGAGATCAATCTTCCAG TCGGTATTTGGTGGACTATTGCTATAAGGAEST: gi|208181572|gb|GD978479.1|GD978479
genomic: CGCGAAAATTTGGATGATGTCACCATTTCCTTCGGAGATCAATCTTCCAGgtattgttat ... tgctgtgtagTCGGTATTTGGTGGACTATTGCTATAAGGA
EST: CGCGAAAATTTGGATGATGTCACCATTTCCTTCGGAGATCAATCTTCCAG TCGGTATTTGGTGGACTATTGCTATAAGGAAGATGAAGATAATGAATTGAT
genomic: CGCGAAAATTTGGATGATGTCACCATTTCCTTCGGAGATCAATCTTCCAGgtattgttat ... tgctgtgtagTCGGTATTTGGTGGACTATTGCTATAAGGAAGATGAAGATAATGAATTGAT
tttgatttgatgaaagtggaatcggcactcatttgatttgatctttgctgtgtagTCGGTATTTGGTGGACTATTGCTATAAGGAAGATGAAGATAATGAATTGATATATTCAAGGGAGGTGAAGCCTCTTGTGTCTGCAGCTTTTGATGGTCAT
atttgat putative branch site (score: 5)
tctttgct CT-rich tract
atttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctttctttcttttcaaattattatgaataattttcttgtgggtttgatttgatgaaagtggaatcggcactcatttgatttgatctttgctgtgtagTCGGTATTTGGTGGACTATTGCTATAAGGAAGATGAAGATAATGAATTGATATATTCAAGGGAGGTGAAGCCTCTTGTGTCTGCAGCTTTTGATGGTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - gggtttg