1 5' 3' | 2 5' 3' | 3 5' 3' |
...catttttttttttcatttactcacttctgcttccttgacatatggtaggcctgctgttttatcttgtgctgacatatttaagattgttttgccattacagGTTTTTGGAGATGATGAATGGTCATTTGGGTTCTGTGAGCAAGGTACCGGGGTTTTTAGTTGCCCTTCTGGAAAGAATCCAATGTATACATATCGTGAAT
species | Glycine max |
transcript | GLYMA09G24630.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTTCAAGGATGGGATTGGTCTTGGTGGCATCTTCCACAGCGCTGTGCAG GTTTTTGGAGATGATGAATGGTCATTTGGGTTCTGTGAGCAAGGTACCGGGEST: gi|193672305|gb|FK618493.1|FK618493
genomic: TCTTCAAGGATGGGATTGGTCTTGGTGGCATCTTCCACAGCGCTGTGCAGgttttgttcc ... gccattacagGTTTTTGGAGATGATGAATGGTCATTTGGGTTCTGTGAGCAAGGTACCGGG
EST: TCTTCAAGGATGGGATTGGTCTTGGTGGCATCTTCCACAGCGCTGTGCAG GTTTTTGGAGATGATGAATGGTCATTTGGGTTCTGTGAGCAAGGTACCGGGEST: gi|15812897|gb|BI785172.1|BI785172
genomic: TCTTCAAGGATGGGATTGGTCTTGGTGGCATCTTCCACAGCGCTGTGCAGgttttgttcc ... gccattacagGTTTTTGGAGATGATGAATGGTCATTTGGGTTCTGTGAGCAAGGTACCGGG
EST: TCTTCAAGGATGGGATTGGTCTTGGTGGCATCTTCCACAGCGCTGTGCAG GTTTTTGGAGATGATGAATGGTCATTTGGGTTCTGTGAGCAAGGTACCGGG
genomic: TCTTCAAGGATGGGATTGGTCTTGGTGGCATCTTCCACAGCGCTGTGCAGgttttgttcc ... gccattacagGTTTTTGGAGATGATGAATGGTCATTTGGGTTCTGTGAGCAAGGTACCGGG
taggcctgctgttttatcttgtgctgacatatttaagattgttttgccattacagGTTTTTGGAGATGATGAATGGTCATTTGGGTTCTGTGAGCAAGGTACCGGGGTTTTTAGTTGCCCTTCTGGAAAGAATCCAATGTATACATATCGTGAAT
tgctgac putative branch site (score: 2)
ttttgcc putative PPT
atatttaagattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catttttttttttcatttactcacttctgcttccttgacatatggtaggcctgctgttttatcttgtgctgacatatttaagattgttttgccattacagGTTTTTGGAGATGATGAATGGTCATTTGGGTTCTGTGAGCAAGGTACCGGGGTTTTTAGTTGCCCTTCTGGAAAGAATCCAATGTATACATATCGTGAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA