1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...cactgcttcattaatgaaatgccaagatgctaatttgggcattgtttgatttgtcacttcaggaagaggaaaatgactttgtttcttgttttgatttcagGGTCTTCTTTATCATGGAAATGACACCTTATTTGAGTCAACTGGCCTTTATGGGGAG
species | Glycine max |
transcript | GLYMA09G24440.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGATCACCGTCCTCAACGCGTTCCCTCACGACCCACAAGCCTTCACTGAG GGTCTTCTTTATCATGGAAATGACACCCTATTTGAGTCAACTGGCCTTTATEST: gi|298171116|gb|HO016148.1|HO016148
genomic: CGATCACCGTCCTCAACGCGTTCCCTCACGACCCACAAGCCTTCACTGAGgtcaaccttc ... ttgatttcagGGTCTTCTTTATCATGGAAATGACACCTTATTTGAGTCAACTGGCCTTTAT
EST: CGATCACCGTCCTCAACGCGTTCCCTCACGACCCACAAGCCTTCACTGAT GGTCTTCTTTATCATGGAAATGACACCTTATTTGAGTCAACTGGCCTTTATEST: gi|298199415|gb|HO042778.1|HO042778
genomic: CGATCACCGTCCTCAACGCGTTCCCTCACGACCCACAAGCCTTCACTGAGgtcaaccttc ... ttgatttcagGGTCTTCTTTATCATGGAAATGACACCTTATTTGAGTCAACTGGCCTTTAT
EST: CGATCACCGTCCTCAAGGCGTTCCCTCACGACCCACAAGCCTTCACTGAG GGTCTTCTTTATCATGGAAATGACACCTTATTTGAGTCAACTGGCCTTTATEST: gi|8826769|gb|BE210499.1|BE210499
genomic: CGATCACCGTCCTCAACGCGTTCCCTCACGACCCACAAGCCTTCACTGAGgtcaaccttc ... ttgatttcagGGTCTTCTTTATCATGGAAATGACACCTTATTTGAGTCAACTGGCCTTTAT
EST: CGATCACCGTCCTCAACGCGTTCCCTCACGACCCACAAGCCTTCACTGAG GGTCTTCTTTATCATGGAAATGACACCTTATTTGAGTCAACTGGCCTTTAT
genomic: CGATCACCGTCCTCAACGCGTTCCCTCACGACCCACAAGCCTTCACTGAGgtcaaccttc ... ttgatttcagGGTCTTCTTTATCATGGAAATGACACCTTATTTGAGTCAACTGGCCTTTAT
ttgatttgtcacttcaggaagaggaaaatgactttgtttcttgttttgatttcagGGTCTTCTTTATCATGGAAATGACACCTTATTTGAGTCAACTGGCCTTTATGGGGAG
ttttgat putative branch site (score: 4)
ctttgtttcttgtttt CT-rich tract
ttttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactgcttcattaatgaaatgccaagatgctaatttgggcattgtttgatttgtcacttcaggaagaggaaaatgactttgtttcttgttttgatttcagGGTCTTCTTTATCATGGAAATGACACCTTATTTGAGTCAACTGGCCTTTATGGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
cactgct
- - - - - - - - -aatgcca
- - - - - - - - - - - - -gatgcta
- - - - - - - - - - - - - - - - - - - - - - - tgatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - cacttca