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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatctctttgttactttctttgggtgtttgtttgttaatttgtacgtaatgccttgcttctgtggtttggtgcctgagtttctgtatgatggtgtttcttttaatcccctttgttcatatcctgctattgtgtttccatgcagACGGCTGCATTTGCACTACCTACTTTAGAGAGGTTGTTGTTCCGTCCAAAGCGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCCACCAGAGAGAGTT

Basic information

species Glycine max
transcript GLYMA09G15220.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G15220.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv18s0001g14540.t01 (Vitis vinifera), 3'ss of exon 3
gtaatctctttgttactttctttgggtgtttgtttgtt--aatttgta-cgtaatgccttgcttctg---tggtttggtgcctgagttt-ctgta----tgatggtgtttcttttaatcccctttgt-----tcatatcctgctattgtgtttccatgcagACGGCTGCATTTGCACTACCTACTTTAGAGAGGTTGTTGTTCCGTCCAAAGCGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCCACCAGAGAGAGTT
        | ||||       ||||||| |||| |  |  | | | ||  ||| | |  ||     |   || |||      || |    ||| |    |||     | |||  | |||   | |||     | ||    ||  ||||    |  |  ||||||||||| ||| |  ||||||| ||||||||||| |||||||||||||| ||  |||  ||||| ||||||||  |||||||||| |||||||||    
-------gtatgttgtgcgtcttgggtgcttgtgtaattgactctataatgtactactatgaaaacgagttgattttactaatgggcaagctgaaaaactgaaaccttctctagttatcggttctgtgaaaataatgatttgggattgctcctttacacagACGGCTGCCTTTTCCTTACCTACATTAGAGAGGTTATTGTTCCGTCCAAAACGTGTGCAAGCAATCAGGGTCCTTGTTCTTACTCCAACCAGAGAGTTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggtgtttcttttaatcccctttgttcatatcctgctattgtgtttccatgcagACGGCTGCATTTGCACTACCTACTTTAGAGAGGTTGTTGTTCCGTCCAAAGCGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCCACCAGAGAGAGTT
          ttttaat  putative branch site (score: 3)
                                          tgtttcc  putative PPT
      tttcttttaat  TA-rich tract