1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttctactcaaatcacccaatccacacaaagagtaataatctatgcttatttttttttaagtattctttataatttttttttgcttccttgatcatcccagTGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAG
species | Glycine max |
transcript | GLYMA09G09430.6 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCTTTATATTTAGTTATTGACATCAACAAAGTCATGGAGGAAGTTAATG TGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCEST: gi|254323218|gb|GR840023.1|GR840023
genomic: GTCTTTATATTTAGTTATTGACATCAACAAAGTCATGGAGGAAGTTAATGgtatgtgcct ... atcatcccagTGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCC
EST: GTCTTTATATTTAGTTATTGACATCAACAAAGTCATGGAGGAAGTTAATG TGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCEST: gi|23729280|gb|BU762725.1|BU762725
genomic: GTCTTTATATTTAGTTATTGACATCAACAAAGTCATGGAGGAAGTTAATGgtatgtgcct ... atcatcccagTGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCC
EST: GTCTTTATATTTAGTTATTGACATCAACAAAGTCATGGAGGAAGTTAATG TGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCEST: gi|15001075|gb|BI321889.1|BI321889
genomic: GTCTTTATATTTAGTTATTGACATCAACAAAGTCATGGAGGAAGTTAATGgtatgtgcct ... atcatcccagTGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCC
EST: GTCTTTATATTTAGTTATTGACATCAACAAAGTCATGGAGGAAGTTAATG TGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCEST: gi|9899108|gb|BE608076.1|BE608076
genomic: GTCTTTATATTTAGTTATTGACATCAACAAAGTCATGGAGGAAGTTAATGgtatgtgcct ... atcatcccagTGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCC
EST: ACAAAGTCATGGAGGAAGTTAATG TGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCEST: gi|213590163|gb|DB955677.1|DB955677
genomic: ACAAAGTCATGGAGGAAGTTAATGgtatgtgcct ... atcatcccagTGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCC
EST: GTCTTTATATTTAGTTATTGACATCAACAAAGTCATGGAGGAAGTTAATG TGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTEST: gi|22521736|gb|BU080547.1|BU080547
genomic: GTCTTTATATTTAGTTATTGACATCAACAAAGTCATGGAGGAAGTTAATGgtatgtgcct ... atcatcccagTGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTT
EST: GTCTTTATATTTAGTTATTGACATCAACAAAGTCATGGAGGAAGTTAATG TGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCEST: gi|254332220|gb|GR843804.1|GR843804
genomic: GTCTTTATATTTAGTTATTGACATCAACAAAGTCATGGAGGAAGTTAATGgtatgtgcct ... atcatcccagTGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCC
EST: GTCTTTATATTTAGTTATTGACATCAACAAAGTCATGGAGGAAGTTAATG TGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCEST: gi|6482422|gb|AW201683.1|AW201683
genomic: GTCTTTATATTTAGTTATTGACATCAACAAAGTCATGGAGGAAGTTAATGgtatgtgcct ... atcatcccagTGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCC
EST: TAGTTATTGACATCAACAAAGTCATGGAGGAAGTTAATG TGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCC
genomic: TAGTTATTGACATCAACAAAGTCATGGAGGAAGTTAATGgtatgtgcct ... atcatcccagTGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCC
ttatttttttttaagtattctttataatttttttttgcttccttgatcatcccagTGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAG
ccttgat putative branch site (score: 5)
tttttttttgcttcct CT-rich tract
tttttttaagtattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctactcaaatcacccaatccacacaaagagtaataatctatgcttatttttttttaagtattctttataatttttttttgcttccttgatcatcccagTGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA