1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttctactcaaatcacccaatccacacaaagagtaataatctatgcttatttttttttaagtattctttataatttttttttgcttccttgatcatcccagTGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAG
species | Glycine max |
transcript | GLYMA09G09430.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCTTTATATTTAGTTATTGACATCAACAAAGTCATGGAGGAAGTTAATG TGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCEST: gi|254348661|gb|GR852340.1|GR852340
genomic: GTCTTTATATTTAGTTATTGACATCAACAAAGTCATGGAGGAAGTTAATGgtatgtgcct ... atcatcccagTGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCC
EST: GTCTTTATATTTAGTTATTGACATCAACAAAGTCATGGAGGAAGTTAATG TGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCEST: gi|213590163|gb|DB955677.1|DB955677
genomic: GTCTTTATATTTAGTTATTGACATCAACAAAGTCATGGAGGAAGTTAATGgtatgtgcct ... atcatcccagTGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCC
EST: GTCTTTATATTTAGTTATTGACATCAACAAAGTCATGGAGGAAGTTAATG TGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTT
genomic: GTCTTTATATTTAGTTATTGACATCAACAAAGTCATGGAGGAAGTTAATGgtatgtgcct ... atcatcccagTGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTT
ttatttttttttaagtattctttataatttttttttgcttccttgatcatcccagTGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAG
ccttgat putative branch site (score: 5)
tttttttttgcttcct CT-rich tract
tttttttaagtattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctactcaaatcacccaatccacacaaagagtaataatctatgcttatttttttttaagtattctttataatttttttttgcttccttgatcatcccagTGGTTCAAACCAAGAATGGAACTGTTTCAGTAGCTTCTGCGTTTGCTGGCCATAAGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA