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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agcatttatgtggtgcatttgagccgcaaatggactttggataggctgaacgccaaaccaaaagcatgcctttataatactatttcttttcatcttgcagTCATGGCAGGAATTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATGATACCAAGATGAATGAGCT

Basic information

species Glycine max
transcript GLYMA09G07530.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213602164|gb|DB962657.1|DB962657
EST:     CAACGACATCACCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAG                         TCATGGCAGGAATTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
genomic: CAACGACATCACCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAGgttcctctct ... catcttgcagTCATGGCAGGAATTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
EST: gi|14990606|gb|BI316279.1|BI316279
EST:     CAACGACATCACCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAG                         TCATGGCAGGAATTGCACCCGAGGGATCACAGTT
genomic: CAACGACATCACCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAGgttcctctct ... catcttgcagTCATGGCAGGAATTGCACCCGAGGGATCACAGTT
EST: gi|298164132|gb|HO013777.1|HO013777
EST:     CAACGACATCGCCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAG                         TCATGGCAGGAATTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
genomic: CAACGACATCACCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAGgttcctctct ... catcttgcagTCATGGCAGGAATTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
EST: gi|12689875|gb|BG156211.1|BG156211
EST:     CAACGACATCACCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAG                         TCATGGCAGGAATTGCACCCGAGGGATCACAGTT
genomic: CAACGACATCACCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAGgttcctctct ... catcttgcagTCATGGCAGGAATTGCACCCGAGGGATCACAGTT
EST: gi|213587858|gb|DB959682.1|DB959682
EST:     CAACGACATCACCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAG                         TCATGGCAGGAATTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
genomic: CAACGACATCACCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAGgttcctctct ... catcttgcagTCATGGCAGGAATTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
EST: gi|24136576|gb|BU927086.1|BU927086
EST:     CAACGACATCACCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAG                         TCATGGCAGGAATTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
genomic: CAACGACATCACCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAGgttcctctct ... catcttgcagTCATGGCAGGAATTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
EST: gi|12689511|gb|BG155847.1|BG155847
EST:     CAACGACATCACCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAG                         TCATGGCAGGAATTGCACCCGAGGGATCACAGTT
genomic: CAACGACATCACCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAGgttcctctct ... catcttgcagTCATGGCAGGAATTGCACCCGAGGGATCACAGTT
EST: gi|213596258|gb|DB960215.1|DB960215
EST:     CAACGACATCACCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAG                         TCATGGCAGGAATTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
genomic: CAACGACATCACCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAGgttcctctct ... catcttgcagTCATGGCAGGAATTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
EST: gi|23728371|gb|BU762237.1|BU762237
EST:     CAACGACATCACCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAG                         TCATGGCAGGAATTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
genomic: CAACGACATCACCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAGgttcctctct ... catcttgcagTCATGGCAGGAATTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
EST: gi|209713719|gb|BW681859.1|BW681859
EST:     CAACGACACCACCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAG                         TCATGGCAGGAATTGCACCCGAGGGATCACTGTTTGATGCTCGTCAATATG
genomic: CAACGACATCACCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAGgttcctctct ... catcttgcagTCATGGCAGGAATTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
EST: gi|19268988|gb|BM885244.1|BM885244
EST:     CAACGACATCACCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAG                         TCATGGCAGGAATTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
genomic: CAACGACATCACCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAGgttcctctct ... catcttgcagTCATGGCAGGAATTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
EST: gi|16347853|gb|BI973448.1|BI973448
EST:     CAACGACATCACCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAG                         TCATGGCAGGAATTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG
genomic: CAACGACATCACCACTCTCTCCGATCAACTACCTCTTTCGTCGCCCTAAGgttcctctct ... catcttgcagTCATGGCAGGAATTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgaacgccaaaccaaaagcatgcctttataatactatttcttttcatcttgcagTCATGGCAGGAATTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATGATACCAAGATGAATGAGCT
                                  ctatttcttttcatct  CT-rich tract
                         tttataatactatttc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agcatttatgtggtgcatttgagccgcaaatggactttggataggctgaacgccaaaccaaaagcatgcctttataatactatttcttttcatcttgcagTCATGGCAGGAATTGCACCCGAGGGATCACAGTTTGATGCTCGTCAATATGATACCAAGATGAATGAGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - tgtggtg
- - - - - - - - - - - - - - - - gactttg
- - - - - - - - - - - - - - - - - - - - - aggctga
- - - - - - - - - - - - - - - - - - - - - - - - - - ccaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgcct