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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatgtcactagcttcttttttttttttgaattcttgtttcttatgtattgtctccctttgcatgtgtttttttagGTACCAAGCTTCAAAGGATGATCTCACTGTTATTCAGCATTGCCAACTGCTCCATCACATGAATAT

Basic information

species Glycine max
transcript GLYMA09G07350.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G07350.1 (Glycine max), 3'ss of exon 1
lower sequence: AT2G18110.1 (Arabidopsis thaliana), 3'ss of exon 2
------------------gtatatgtcactagcttcttttttttttttgaattcttgt--------ttcttatgtattgtctccctttgcatgtgtttttttagGTACCAAGCTTCAAAGGATGATCTCACTGTTATT-CAGCATTGCCAACTGCTCCATCACATGAATAT---------------------------------
                       |||| | |   ||| | || ||||  ||   | ||        ||  | | |  |||||| || || |||| | ||| ||||||||||||||||||||||||| |||||||  || ||||  |  |||   | ||| |    || | |                                 
gttagaatctgttttctaagggctgtctcaattatctatcttgttttgaaacaatagtagtaaccattactttcttctgtctctctatgtatgtatgtttatagGTACCAAGCTTCAAAGGATGATATCACTGTGTTTACAGCTCTTTCAAAGCCCCCAACTTCAGAGTTTGTCAATGTATCTCGTTGGTTCAACCACATCGAT

upper sequence: GLYMA09G07350.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv17s0000g01540.t01 (Vitis vinifera), 3'ss of exon 2
------------------------------------gtatatgtcactagcttcttttttttttttgaattct----------tgtttcttatgtattgtctccctttg----catgtgtttttttagGTACCAAGCTTCAAAGGATGATCTCACTGTT-ATTCAGCATTGCCAACTGCTCCATCACATGAATAT---------------------------------
                                     |  || || |   | |   | ||    |  ||   |          || ||  ||  |||| |     | |     |||   |||| | |||||||||||||||||||||||| |||||||| || ||||  |  |||  |||||||||  ||||||                                  
gtaagttttggtatctgatttctttacaatggatactttgatctctcagacatgggtattgaagtgaaaacatgaaaagataatgattaatacatattatgattttgttaaatcattaattttctcagGTACCAAGCTTCAAAGGATGATATCACTGTTCATGCAGCTCTTTCAAAGGCTCCATCATCTGAATACGTGAATGTCTCTAGGTGGTACAACCACATAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttgaattcttgtttcttatgtattgtctccctttgcatgtgtttttttagGTACCAAGCTTCAAAGGATGATCTCACTGTTATTCAGCATTGCCAACTGCTCCATCACATGAATAT
                                            tgttttttt  CT-rich tract
                                            tgttttttta  TA-rich tract