1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagattatattagcaaatgcttaatgtgtttattaacaagcaaatcgttgaacatagtgcttttgcagGTAACGGTTGATGTTCCAGATATACGGGGAAGGACTGAAATTTTAAAGGTTCATGGTAGCAATAAAAAGTTTGAAGCTGATGTTTCACTTGAGGTAATTG
species | Glycine max |
transcript | GLYMA09G05820.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTCTTGATTCTGCATTGTTAAGGCCAGGACGATTTGATAGACAG GTAACGGTTGATGTTCCAGATATACGGGGAAGGACTGAAATTTTAAAGGTTEST: gi|16283589|gb|BI945631.1|BI945631
genomic: ATTCTTGATTCTGCATTGTTAAGGCCAGGACGATTTGATAGACAGgtaagattat ... gcttttgcagGTAACGGTTGATGTTCCAGATATACGGGGAAGGACTGAAATTTTAAAGGTT
EST: TTGACATTCTTGATTCTGCATTGTTAAGGCCGGGACGATTTGATAGGCAG GTCACGGTTGATGTTCCAGATATACGAGGAAGGACTGAAATTTTAAAGGTTEST: gi|18692866|gb|BM521714.1|BM521714
genomic: TTGACATTCTTGATTCTGCATTGTTAAGGCCAGGACGATTTGATAGACAGgtaagattat ... gcttttgcagGTAACGGTTGATGTTCCAGATATACGGGGAAGGACTGAAATTTTAAAGGTT
EST: TTGACATTCTTGATTCTGCATTGTTAAGGCCAGGACGATTTGATAGACAT GTAACGGTTGATGTTCCAGATATACGGGGAAGGACTGAAATTTTAAAGGTTEST: gi|193444554|gb|FK409824.1|FK409824
genomic: TTGACATTCTTGATTCTGCATTGTTAAGGCCAGGACGATTTGATAGACAGgtaagattat ... gcttttgcagGTAACGGTTGATGTTCCAGATATACGGGGAAGGACTGAAATTTTAAAGGTT
EST: ACGATTTGATAGGCAG GTCACGGTTGATGTTCCAGATATACGAGGAAGGACTGAAATTTTAAAGGTTEST: gi|15589722|gb|BI674338.1|BI674338
genomic: ACGATTTGATAGACAGgtaagattat ... gcttttgcagGTAACGGTTGATGTTCCAGATATACGGGGAAGGACTGAAATTTTAAAGGTT
EST: TTGACATTCTTGATTCTGCATTGTTAAGGCCGGGACGATTTGATAGGCAG GTCACGGGTGATGTTCCAGATATACG
genomic: TTGACATTCTTGATTCTGCATTGTTAAGGCCAGGACGATTTGATAGACAGgtaagattat ... gcttttgcagGTAACGGTTGATGTTCCAGATATACG
caaatgcttaatgtgtttattaacaagcaaatcgttgaacatagtgcttttgcagGTAACGGTTGATGTTCCAGATATACGGGGAAGGACTGAAATTTTAAAGGTTCATGGTAGCAATAAAAAGTTTGAAGCTGATGTTTCACTTGAGGTAATTG
tattaac putative branch site (score: 1)
tgctttt putative PPT
ttaatgtgtttattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagattatattagcaaatgcttaatgtgtttattaacaagcaaatcgttgaacatagtgcttttgcagGTAACGGTTGATGTTCCAGATATACGGGGAAGGACTGAAATTTTAAAGGTTCATGGTAGCAATAAAAAGTTTGAAGCTGATGTTTCACTTGAGGTAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT