Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|207685691|gb|GD667735.1|GD667735EST: CCGACATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCCGTCGCC GCGTTTGAGAAGTACAATGTGGAGAAAGACGTTGCGGAGCAGATAAAGAAG
genomic: CCGACATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCCGTCGCCgttagtctca ... gattattcagGCGTTTGAGAAGTACAATGTGGAGAAAGACGTTGCGGAGCAGATAAAGAAG
EST:
gi|58023785|gb|CX710526.1|CX710526EST: CCGACATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCCGTCGCC GCGTTTGAGAAGTACAATGTGGAGAAAGACGTTGCGGAGCAGATAAAGAAG
genomic: CCGACATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCCGTCGCCgttagtctca ... gattattcagGCGTTTGAGAAGTACAATGTGGAGAAAGACGTTGCGGAGCAGATAAAGAAG
EST:
gi|193482152|gb|FK445689.1|FK445689EST: GACATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCCGTCGCC GCGTTTGAGAAGTACAATGTGGAGAAAGACGTTGCGGAGCAGATAAAGAAG
genomic: GACATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCCGTCGCCgttagtctca ... gattattcagGCGTTTGAGAAGTACAATGTGGAGAAAGACGTTGCGGAGCAGATAAAGAAG
EST:
gi|298182056|gb|HO026231.1|HO026231EST: CCGACATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCCGTCGCC GCGTTTGAGAAGTACAATGTGGAGAAAGACGTTGCGGAGCAGATAAAGAAG
genomic: CCGACATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCCGTCGCCgttagtctca ... gattattcagGCGTTTGAGAAGTACAATGTGGAGAAAGACGTTGCGGAGCAGATAAAGAAG
EST:
gi|254320944|gb|GR827393.1|GR827393EST: CCGACATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCCGTCGCC GCGTTTGAGAAGTACAATGTGGAGAAAGACGTTGCGGAGCAGATAAAGAAG
genomic: CCGACATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCCGTCGCCgttagtctca ... gattattcagGCGTTTGAGAAGTACAATGTGGAGAAAGACGTTGCGGAGCAGATAAAGAAG
EST:
gi|208335922|gb|GE134707.1|GE134707EST: CCGACATGCAGAAGGAGGCCGTTGATATCGCCGTCGCC GCGTTTGAGAAGTACAATGTGGAGAAAGACGTTGCGGAGCAGATAAAGAAG
genomic: CCGACATGCAGAAGGAGGCCGTTGATATCGCCGTCGCCgttagtctca ... gattattcagGCGTTTGAGAAGTACAATGTGGAGAAAGACGTTGCGGAGCAGATAAAGAAG
EST:
gi|209727889|gb|BW663401.1|BW663401EST: CCGACATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCCGTCGCC GCGTTTGAGAAGTACAATGTGGAGAAAGACGTTGCGGAGCAGATAAAGAAG
genomic: CCGACATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCCGTCGCCgttagtctca ... gattattcagGCGTTTGAGAAGTACAATGTGGAGAAAGACGTTGCGGAGCAGATAAAGAAG
EST:
gi|254320943|gb|GR827392.1|GR827392EST: CCGACATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCCGTCGCC GCGTTTGAGAAGTACAATGTGGAGAAAGACGTTGCGGAGCAGATAAAGAAG
genomic: CCGACATGATCCCCGACATGCAGAAGGAGGCCGTTGATATCGCCGTCGCCgttagtctca ... gattattcagGCGTTTGAGAAGTACAATGTGGAGAAAGACGTTGCGGAGCAGATAAAGAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggttgtgcttgctgcgttgtgtcgtaaagtcttgacctttttgcggattattcagGCGTTTGAGAAGTACAATGTGGAGAAAGACGTTGCGGAGCAGATAAAGAAGGAGTTCGATAAGAGGCATGGACCCACTTGGCATTGCATCGTTGGTCGTA
tcttgac putative branch site (score: 3)
attattca TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagtctcaacaactttcttctcttttttttatggttcttcgttttggattctgtttctgggtttggttgtgcttgctgcgttgtgtcgtaaagtcttgacctttttgcggattattcagGCGTTTGAGAAGTACAATGTGGAGAAAGACGTTGCGGAGCAGATAAAGAAGGAGTTCGATAAGAGGCATGGACCCACTTGGCATTGCATCGTTGGTCGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA