1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gttttgtacttataggatttaatcaagttttcagtttgttggcacaatttgtgtccatgagaaattttgcttaaaccaatatttctttcttcctttccagGTTATTTTGCTTGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGGCTTTAAGCTTGTGAAAGAATAATTACTGGATGGAACTTGCAAGACCTGCCT
species | Glycine max |
transcript | GLYMA09G02830.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCTTCTGTCTGTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCATC GTTATTTTGCTTGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGGCTEST: gi|7692451|gb|AW760557.1|AW760557
genomic: TCTTCTGTCTGTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCATCgtaagcttca ... tcctttccagGTTATTTTGCTTGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGGCT
EST: TCTTCTGTCTGTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCATC GTTATTTTGCTTGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGGCTEST: gi|151394014|gb|EV263885.1|EV263885
genomic: TCTTCTGTCTGTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCATCgtaagcttca ... tcctttccagGTTATTTTGCTTGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGGCT
EST: TCTTCTGTCTGTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCATC GTTATTTTGCTTGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGGCTEST: gi|120495547|gb|EH223714.1|EH223714
genomic: TCTTCTGTCTGTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCATCgtaagcttca ... tcctttccagGTTATTTTGCTTGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGGCT
EST: TCTTCTGTCTGTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCATC GTTATTTTGCTTGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGGCT
genomic: TCTTCTGTCTGTGGATTTCAAACTCTGCCATTTCGATTCCTTCGTTCATCgtaagcttca ... tcctttccagGTTATTTTGCTTGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGGCT
aatttgtgtccatgagaaattttgcttaaaccaatatttctttcttcctttccagGTTATTTTGCTTGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGGCTTTAAGCTTGTGAAAGAATAATTACTGGATGGAACTTGCAAGACCTGCCT
ccaatatttctttctt CT-rich tract
aaattttgcttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttgtacttataggatttaatcaagttttcagtttgttggcacaatttgtgtccatgagaaattttgcttaaaccaatatttctttcttcctttccagGTTATTTTGCTTGACTATTGTAGAGGCTGCAGCCTGGATGATTGGTGGGCTTTAAGCTTGTGAAAGAATAATTACTGGATGGAACTTGCAAGACCTGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - tgttggc
- - - - - - - - - - - - - - - - - - - - - - - - - - -tccatga