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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagggagagggagagatagataaagagaaataagaggtgttgagagggagtttagaatttgtgggtgtctaaatataatcactcgtttgtgtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAAGGTTTATGAAGGAATCCCTCCTCCATATGACAAGACCAAGAGAATGGTT

Basic information

species Glycine max
transcript GLYMA09G02790.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G02790.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G07110.1 (Arabidopsis thaliana), 3'ss of exon 1
--cagggagagggagagatagataaagagaaataagaggtgtt-----gagagggagtttagaatttgtgggtgtctaaatataatcactcgtttgtgtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAAGGTTTATGAAGGAATCCCTCCTCCATATGACAAGACCAAGAGAATGGTT
    |          || |  | || | | | |    | | ||     ||||    ||    |||  |    |||  || | |  |   | ||||||||    | || ||||| ||||||||||| |||||||| |    ||| ||||| || |||||||| | ||||||| | ||| ||||||||||||||| |||||| ||||| 
ctttgatgtttttgtagttgtacaatgtgtagtttttgttttttgtttgagaaaatgtgccaaatccg---atgttgaattgttgtt-tttgtttgtgtg---gcagTATGATTCCACACAAGACTAAGCGTGGAGCTAATGCACTTGCCCGCTTGAAGGTCTTTGAAGGAGTTCCTACTCCATATGACAAGATCAAGAGGATGGTC

upper sequence: GLYMA09G02790.1 (Glycine max), 3'ss of exon 1
lower sequence: AT4G13170.1 (Arabidopsis thaliana), 3'ss of exon 1
-cagggagagggagagatagataaagagaaataagaggtgttgagagggagtttagaatttgtgggtgtctaaatataatcactcgtttgtgtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAAGGTTTATGAAGGAATCCCTCCTCCATATGACAAGACCAAGAGAATGGTT
 |   | || |      | |||  || |   ||| |    |  ||      |||    ||      ||   ||||  |||   | | || |||  ||| || ||||| ||||||||||| |||||||| |  ||||| |||||||| |||||||||| ||| |||||||| ||||| || |||||||  ||||||||||||
tctttgtgaagattcagt-gatgtagcgttttaataaagatgaagtctttctttttttttgagttttggtgaaattgaatttttggcttttgtggttgcagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCACTTGCTCGCTTGAAGGTTTTTGAGGGAATCCCACCTCCTTACGACAAGATTAAGAGAATGGTT

upper sequence: GLYMA09G02790.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G48760.1 (Arabidopsis thaliana), 3'ss of exon 1
------------------------------------------------------------------------------------------------cagggagagggagagatagataaagagaaataagaggtgttgagagggagtttagaatttgtgggtgtctaaatataatcactcgtttgtgtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAAGGTTTATGAAGGAATCCCTCCTCCATATGACAAGACCAAGAGAATGGTT
                                                                                                  | | ||   |    | | | |    || | |  | | |||| | |  | ||   ||    | |||  | |   |  | |   ||||   ||| || || ||||| ||||||||||| |||||||| |  |||||  | || ||| ||||||| ||||||||  | ||| ||||||||||||||| |||||| ||||| 
gttcgtatatcaatctctcttatctctccaattagatgaggtttcgagaaattgatggttcttgctctgtatggattaagtttgtgtttgatacttatgagtgaatcatttgtggttgatttcaattcaatgcttttgaaatgatgatttagatagcagagtgattcatagttgttatgtgttttgatttgtgaagTATGATTCCACACAAGACGAAGCGTGGAGCTGCTGCATTAGCACGTCTGAAGGTATATGAAGGTGTTCCTACTCCATATGACAAGATCAAGAGGATGGTC

upper sequence: GLYMA09G02790.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G24830.1 (Arabidopsis thaliana), 3'ss of exon 1
-cagggagagggagagatagataaagagaaataagaggtgttgagagggagtttagaatt----tgtgggtgtctaaatataatcactcgtttgtgtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAAGGTTTATGAAGGAATCCCTCCTCCATATGACAAGACCAAGAGAATGGTT
   |  ||     ||  |   |  |  ||  |  | | |    |  |   ||||   | |    ||  ||  |  |||| | |||| | ||       |||  || ||||| ||||||||||| |||||||| |  ||||||||||| ||||||||||| | ||| ||| | || ||||| |||||||||  |||||||||||| 
atggtcagcttttgatctttgtgcaatgatgtctgtgttaggaattgtatgtttgatagtgtgatggaggatttgaaatgtgatcatttgtca-----tttacagGATGATTCCACACAAGACCAAGCGTGGTGCTGCTGCTCTTGCACGTTTGAAGGTGTTTGAGGGAGTACCACCTCCTTATGACAAGGTCAAGAGAATGGTC

upper sequence: GLYMA09G02790.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv07s0005g06490.t01 (Vitis vinifera), 3'ss of exon 1
cagggagagggagagatagataaagagaaataagaggtgttgagagggagtttagaatttgtgggtgtctaaatataatcactcgtttgtgtttt--tgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAAGGTTTATGAAGGAATCCCTCCTCCATATGACAAGACCAAGAGAATGGTT
 |    |  |     |    |          |  ||||    | |  ||| |||   |         | | |||  | |   | | || ||||||  ||||| ||||| || |||||||| |||||||| | ||| || ||||| || ||||||| |||||| ||||||||||| |||||||| ||||  ||||| ||||| 
-attttggtgcctgtacctttccttcacttcattaggtacc-atacagagcttaatttcaacactgtttttaatgaatttttttggttttgttttattgtagGATGATTCCGCACAAGACCAAGCGTGGAGCAGCAGCCCTTGCACGATTGAAGGCTTATGAGGGAATCCCTCCACCATATGATAAGATGAAGAGGATGGTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213600139|gb|DB970243.1|DB970243
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|209708662|gb|BW678839.1|BW678839
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|207826033|gb|GD799788.1|GD799788
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|209700950|gb|BW661317.1|BW661317
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|10845453|gb|BF068572.1|BF068572
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|11413396|gb|BF425407.1|BF425407
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|298192962|gb|HO033396.1|HO033396
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|58019129|gb|CX705871.1|CX705871
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|254345112|gb|GR851488.1|GR851488
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|4397463|gb|AI496460.1|AI496460
EST:     CCCATCCACTTCCGTGCCCCCTTCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|14259726|gb|BG882634.1|BG882634
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|120493991|gb|EH222158.1|EH222158
EST:     CCATCCACTTCCGTGGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCATCCACTTCCGT-GCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|22931755|gb|BU548894.1|BU548894
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|13180779|gb|BG352119.1|BG352119
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|298192908|gb|HO033342.1|HO033342
EST:     CCCATCCACTTCCGCGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|20075807|gb|BQ094590.1|BQ094590
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|14990945|gb|BI316618.1|BI316618
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|18713999|gb|BM522755.1|BM522755
EST:     GCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: GCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|23733429|gb|BU764914.1|BU764914
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|192328024|gb|FK021770.1|FK021770
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGACGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|209700949|gb|BW661316.1|BW661316
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|151396042|gb|EV265919.1|EV265919
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|254331326|gb|GR843338.1|GR843338
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|10846520|gb|BF069378.1|BF069378
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTTCTTCT-GCTCGTTTGA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCT-CTTGCTCGTTTGA
EST: gi|4296894|gb|AI442540.1|AI442540
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCT
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCT
EST: gi|192294449|gb|FG987378.1|FG987378
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|298185183|gb|HO030396.1|HO030396
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|6482751|gb|AW201973.1|AW201973
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATTCCACCCAAGACCAAAACCTTGGGGAAGCTGCTCTTGCTCGTTTG
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGAC-AAAGCGT-GGGGAAGCTGCTCTTGCTCGTTTG
EST: gi|6846057|gb|AW348347.1|AW348347
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|4313752|gb|AI460871.1|AI460871
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|7232973|gb|AW568324.1|AW568324
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|16997203|gb|BM086575.1|BM086575
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|8827629|gb|BE211359.1|BE211359
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|298166349|gb|HO008586.1|HO008586
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCCTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|6913397|gb|AW394927.1|AW394927
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGTGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|208057060|gb|GD854725.1|GD854725
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCT
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCT
EST: gi|193330858|gb|FK293788.1|FK293788
EST:     CTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTG
genomic: CTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTG
EST: gi|19347245|gb|BM892125.1|BM892125
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|192307103|gb|FK002727.1|FK002727
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|192331549|gb|FK023425.1|FK023425
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|58019326|gb|CX706068.1|CX706068
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|298199422|gb|HO042785.1|HO042785
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACAC
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACAC
EST: gi|4303703|gb|AI443514.1|AI443514
EST:     CATCCACTT-CGTGCCCCCCT-CAAGATTCTTTTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CATCCACTTCCGTG-CCCCCTCCAAGA-TCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|13480522|gb|BG509865.1|BG509865
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGGAAGCTGCTCTTGCTCGTTTGA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGG-AAGCTGCTCTTGCTCGTTTGA
EST: gi|120493138|gb|EH221305.1|EH221305
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|42723007|gb|CK768906.1|CK768906
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|17024028|gb|BM095062.1|BM095062
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|298181971|gb|HO026146.1|HO026146
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|20075731|gb|BQ094514.1|BQ094514
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|298171356|gb|HO016388.1|HO016388
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|17023613|gb|BM094647.1|BM094647
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|193663175|gb|FK604495.1|FK604495
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|7924979|gb|AW831005.1|AW831005
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|58018845|gb|CX705587.1|CX705587
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|20498735|gb|BQ273665.1|BQ273665
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
EST: gi|5606895|gb|AI900993.1|AI900993
EST:     CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGG                         AATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA
genomic: CCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtcatt ... gtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggagtttagaatttgtgggtgtctaaatataatcactcgtttgtgtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAAGGTTTATGAAGGAATCCCTCCTCCATATGACAAGACCAAGAGAATGGTT
                     gtctaaa  putative branch site (score: 3)
                                            tgttttt  putative PPT
                    tgtctaaatataat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cagggagagggagagatagataaagagaaataagaggtgttgagagggagtttagaatttgtgggtgtctaaatataatcactcgtttgtgtttttgtagAATGATACCACACAAGACAAAGCGTGGGGAAGCTGCTCTTGCTCGTTTGAAGGTTTATGAAGGAATCCCTCCTCCATATGACAAGACCAAGAGAATGGTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- -ggagagg
- - - gagggag
- - - - - - - - - - - aagagaaa
- - - - - - - - - - - - - - - - - -ggtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatataa