1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtagttaataaagcctgatttccttttcttatcctgaaatcttcatgtgtaaattatcatcagcatcactttctgactaggttctggatgttatctgcagAAGCTACACCAAAAGCAATCATGCGGACTATGAATGTCAAGGGTTTGACTCTGTTTCATTTGAAGAGTCATCTTCAG
species | Glycine max |
transcript | GLYMA09G02030.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTTGCATGAACGCTTCGTTGATGCGGTCACGCAGCTTGGTGGAGCTAGTA AAGCTACACCAAAAGCAATCATGCGGACTATGAATGTCAAGGGTTTGACTCEST: gi|192325737|gb|FK015094.1|FK015094
genomic: CTTGCATGAACGCTTCGTTGATGCGGTCACGCAGCTTGGTGGAGCTAGTAgtgagtttct ... ttatctgcagAAGCTACACCAAAAGCAATCATGCGGACTATGAATGTCAAGGGTTTGACTC
EST: CTTGCATGAACGCTTCGTTGATGCGGTCACGCAGCTTGGTGGAGCTAGTA AAGCTACACCAAAAGCAATCATGCGGACTATGAATGTCAAGGGTTTGACTCEST: gi|192323973|gb|FK015694.1|FK015694
genomic: CTTGCATGAACGCTTCGTTGATGCGGTCACGCAGCTTGGTGGAGCTAGTAgtgagtttct ... ttatctgcagAAGCTACACCAAAAGCAATCATGCGGACTATGAATGTCAAGGGTTTGACTC
EST: CTTGCATGAACGCTTCGTTGATGCGGTCACGCAGCTTGGTGGAGCTAGTA AAGCTACACCAAAAGCAATCATGCGGACTATGAATGTCAAGGGTTTGACTCEST: gi|7147320|gb|AW509242.1|AW509242
genomic: CTTGCATGAACGCTTCGTTGATGCGGTCACGCAGCTTGGTGGAGCTAGTAgtgagtttct ... ttatctgcagAAGCTACACCAAAAGCAATCATGCGGACTATGAATGTCAAGGGTTTGACTC
EST: CTTGCATGAACGCTTCGTTGATGCGGTCACGCAGCTTGGTGGAGCTAGTA AAGCTACACCAAAAGCAATCATGCGGACTATGAATGTCAACGGTTTGACTC
genomic: CTTGCATGAACGCTTCGTTGATGCGGTCACGCAGCTTGGTGGAGCTAGTAgtgagtttct ... ttatctgcagAAGCTACACCAAAAGCAATCATGCGGACTATGAATGTCAAGGGTTTGACTC
tgtgtaaattatcatcagcatcactttctgactaggttctggatgttatctgcagAAGCTACACCAAAAGCAATCATGCGGACTATGAATGTCAAGGGTTTGACTCTGTTTCATTTGAAGAGTCATCTTCAG
ttctgac putative branch site (score: 2)
aaattatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagttaataaagcctgatttccttttcttatcctgaaatcttcatgtgtaaattatcatcagcatcactttctgactaggttctggatgttatctgcagAAGCTACACCAAAAGCAATCATGCGGACTATGAATGTCAAGGGTTTGACTCTGTTTCATTTGAAGAGTCATCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - -agcctga
- - - - - - - - - - - - - - - -tcctgaa
- - - - - - - - - - - - - - - - - - - - - tcatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -catcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttctg