Sequence
atgc intronic sequence ATGC exonic sequence...gtcaacattttattgttaaactgagaatattatttttattttttttcattctgtggggagatggctgactacttgtttgtgatgttgctgcctttgatagGTTGTTTGTTATTTTTGGAGACTTAAATGGATGCTAAGCCGTGGATTAGGTCAATTTGATCTCAACTGAAACTTTTTAGCATTTCTGATGGACTCGAAAA
Basic information
species | Glycine max |
transcript | GLYMA09G01800.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|42722968|gb|CK768867.1|CK768867EST: GCAAAAGCAACGAAGCTGTGTTCTGATCCTTCAAATTAG GTTGTTTGTTATTTTTGGAGACTTAAATGGATGCTAAGCCGTGGATTAGGT
genomic: GCAAAAGCAACGAAGCTGTGTTCTGATCCTTCAAATTAGgtactctttt ... cctttgatagGTTGTTTGTTATTTTTGGAGACTTAAATGGATGCTAAGCCGTGGATTAGGT
EST:
gi|254347207|gb|GR856877.1|GR856877EST: NNNNNNNNNNNGCAAAAGCAACGAAGCTGTGTTCTGATCCTTCAAATTAG GTTGTTTGTTATTTTTGGAGACTTAAATGGATGCTAAGCCGTGGATTAGGT
genomic: TCTCTCTCTCTGCAAAAGCAACGAAGCTGTGTTCTGATCCTTCAAATTAGgtactctttt ... cctttgatagGTTGTTTGTTATTTTTGGAGACTTAAATGGATGCTAAGCCGTGGATTAGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcattctgtggggagatggctgactacttgtttgtgatgttgctgcctttgatagGTTGTTTGTTATTTTTGGAGACTTAAATGGATGCTAAGCCGTGGATTAGGTCAATTTGATCTCAACTGAAACTTTTTAGCATTTCTGATGGACTCGAAAA
ggctgac putative branch site (score: 3)
ctgccttt putative PPT
tttgata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcaacattttattgttaaactgagaatattatttttattttttttcattctgtggggagatggctgactacttgtttgtgatgttgctgcctttgatagGTTGTTTGTTATTTTTGGAGACTTAAATGGATGCTAAGCCGTGGATTAGGTCAATTTGATCTCAACTGAAACTTTTTAGCATTTCTGATGGACTCGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - ggggaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct