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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcacattttaatcgtcgtttcgtttcatctcgtgtcgtatttgattcccgctggcttttgaattcaattttcgttgttataaacagTTGGTTTCGCTAGCACAAGCAGGGCAGGAACTTAAATCAGATATCCTCAAAACGCAAA

Basic information

species Glycine max
transcript GLYMA09G01160.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208156473|gb|GD957693.1|GD957693
EST:     TCAAAAGGCAAGGGTTTTTGGGCTTCACAGAGTTTGTTACTGCAATGCAG                         TTGGTTTCGCTAGCACAAGCAGGGCAGGAACTTAAATCAGATATCCTCAAA
genomic: TCAAAAGGCAAGGGTTTTTGGGCTTCACAGAGTTTGTTACTGCAATGCAGgtttcacatt ... ttataaacagTTGGTTTCGCTAGCACAAGCAGGGCAGGAACTTAAATCAGATATCCTCAAA
EST: gi|209701792|gb|BW667417.1|BW667417
EST:     TCAAAAGGCAAGGGTTTTTGGGCTTCACAGAGTTTGTTACTGCAATGCAG                         TTGGTTTCGCTAGCACAAGCAGGGCAGGAACTTAAATCAGATATCCTCAAA
genomic: TCAAAAGGCAAGGGTTTTTGGGCTTCACAGAGTTTGTTACTGCAATGCAGgtttcacatt ... ttataaacagTTGGTTTCGCTAGCACAAGCAGGGCAGGAACTTAAATCAGATATCCTCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtcgtatttgattcccgctggcttttgaattcaattttcgttgttataaacagTTGGTTTCGCTAGCACAAGCAGGGCAGGAACTTAAATCAGATATCCTCAAAACGCAAA
       atttgat  putative branch site (score: 5)
                        ttttgaattcaatttt  TA-rich tract