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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacctctctaaccgcctttcatcctttttttcaattatttttttgtgcttaattctaatcaattctctctctctctctctctctctttatagACTGGTTTACAACTCCTTACTGCTAACACCAGGAGTGACCAATCTACCGTGGATGACGGGCTTTCATCGGATGCAGAAGATAAGCGAGCCAAAACCACCG

Basic information

species Glycine max
transcript GLYMA09G00820.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21993769|gb|BQ785297.1|BQ785297
EST:     CACCCAACATCGTCAAGAAGGAACTTGATCAAACACCTCTTCACATTAAT                         ACTGGTTTACAACTCCTTACTGCTAACACCAGGAGTGACCAATCTACCGTG
genomic: CACCCAACATCGTCAAGAAGGAACTTGATCAAACACCTCTTCACATTAATgtaacctctc ... ctctttatagACTGGTTTACAACTCCTTACTGCTAACACCAGGAGTGACCAATCTACCGTG
EST: gi|21995158|gb|BQ786686.1|BQ786686
EST:     CACCCAACATCGTCAAGAAGGAACTTGATCAAACACCTCTTCACATTAAT                         ACTGGTTTACAACTCCTTACTGCTAACACCAGGAGTGACCAATCTACCGTG
genomic: CACCCAACATCGTCAAGAAGGAACTTGATCAAACACCTCTTCACATTAATgtaacctctc ... ctctttatagACTGGTTTACAACTCCTTACTGCTAACACCAGGAGTGACCAATCTACCGTG
EST: gi|209698051|gb|BW680372.1|BW680372
EST:     CACCCAACATCGTCAAGAAGGAACTTGATCAAACACCTCTTCACATTAAT                         ACTGGTTTACAACTCCTTACTGCTAACACCAGGAGTGACCAATCTACCGTG
genomic: CACCCAACATCGTCAAGAAGGAACTTGATCAAACACCTCTTCACATTAATgtaacctctc ... ctctttatagACTGGTTTACAACTCCTTACTGCTAACACCAGGAGTGACCAATCTACCGTG
EST: gi|14990745|gb|BI316418.1|BI316418
EST:     CACCCAACATCGTCAAGAAGGAACTTGATCAAACACCTCTTCACATTAAT                         ACTGGTTTACAACTCCTTACTGCTAACACCAGGAGTGACCAATCTACCGTG
genomic: CACCCAACATCGTCAAGAAGGAACTTGATCAAACACCTCTTCACATTAATgtaacctctc ... ctctttatagACTGGTTTACAACTCCTTACTGCTAACACCAGGAGTGACCAATCTACCGTG
EST: gi|213614601|gb|DB969531.1|DB969531
EST:     CACCCAACATCGTCAAGAAGGAACTTGATCAAACACCTCTTCACATTAAT                         ACTGGTTTACAACTCCTTACTGCTAACACCAGGAGTGACCAATCTACCGTG
genomic: CACCCAACATCGTCAAGAAGGAACTTGATCAAACACCTCTTCACATTAATgtaacctctc ... ctctttatagACTGGTTTACAACTCCTTACTGCTAACACCAGGAGTGACCAATCTACCGTG
EST: gi|14205880|gb|BG839558.1|BG839558
EST:     CACCCAACATCGTCAAGAAGGAACTTGATCAAACACCTCTTCACATTAAT                         ACTGGTTTACAACTCCTTACTGCTAACACCAGGAGTGACCAATCTACCGTG
genomic: CACCCAACATCGTCAAGAAGGAACTTGATCAAACACCTCTTCACATTAATgtaacctctc ... ctctttatagACTGGTTTACAACTCCTTACTGCTAACACCAGGAGTGACCAATCTACCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttgtgcttaattctaatcaattctctctctctctctctctctctttatagACTGGTTTACAACTCCTTACTGCTAACACCAGGAGTGACCAATCTACCGTGGATGACGGGCTTTCATCGGATGCAGAAGATAAGCGAGCCAAAACCACCG
               ttctaat  putative branch site (score: 2)
               ttctaatcaattctct  CT-rich tract
           ttaattctaatcaatt  TA-rich tract