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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcatacatacatcaatcaatttccggatgttgtttcgtctttccttttccgatttcttatttccataacgcttttcacagATCTTGTATACTTGGATCATGCTGGGGCAACTCTATACTCTGACCTGCAAATGGAATCTGTTTTCAATGATCTCACTACTAACCTATACGCAAATCCTC

Basic information

species Glycine max
transcript GLYMA09G00460.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213608696|gb|DB968983.1|DB968983
EST:     GTCCGTTGATCAAATTCGAGCTACTGAATTCAAGAGATTACAATTACAAG                         ATCTTGTATACTTGGATCATGCTGGGGCAACTCTATACTCTGACCTGCAAA
genomic: GTCCGTTGATCAAATTCGAGCTACTGAATTCAAGAGATTACAATTACAAGgtcatacata ... cttttcacagATCTTGTATACTTGGATCATGCTGGGGCAACTCTATACTCTGACCTGCAAA
EST: gi|213617030|gb|DB961510.1|DB961510
EST:     GTCCGTTGATCAAATTCGAGCTACTGAATTCAAGAGATTACAATTACAAG                         ATCTTGTATACTTGGATCATGCTGGGGCAACTCTATACTCTGACCTGCAAA
genomic: GTCCGTTGATCAAATTCGAGCTACTGAATTCAAGAGATTACAATTACAAGgtcatacata ... cttttcacagATCTTGTATACTTGGATCATGCTGGGGCAACTCTATACTCTGACCTGCAAA
EST: gi|213607757|gb|DB959096.1|DB959096
EST:     GTCCGTTGATCAAATTCGAGCTACTGAATTCAAGAGATTACAATTACAAG                         ATCTTGTATACTTGGATCATGCTGGGGCAACTCTATACTCTGACCTGCAAA
genomic: GTCCGTTGATCAAATTCGAGCTACTGAATTCAAGAGATTACAATTACAAGgtcatacata ... cttttcacagATCTTGTATACTTGGATCATGCTGGGGCAACTCTATACTCTGACCTGCAAA
EST: gi|209697830|gb|BW670086.1|BW670086
EST:     GTCCGTTGATCAAATTCGAGCTACTGAATTCAAGAGATTACAATTACAAG                         ATCTTGTATACTTGGATCATGCTGGGGCAACTCTATACTCTGACCTGCAAA
genomic: GTCCGTTGATCAAATTCGAGCTACTGAATTCAAGAGATTACAATTACAAGgtcatacata ... cttttcacagATCTTGTATACTTGGATCATGCTGGGGCAACTCTATACTCTGACCTGCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgttgtttcgtctttccttttccgatttcttatttccataacgcttttcacagATCTTGTATACTTGGATCATGCTGGGGCAACTCTATACTCTGACCTGCAAATGGAATCTGTTTTCAATGATCTCACTACTAACCTATACGCAAATCCTC
                                     ccataac  putative branch site (score: 3)
 cgcttttc  CT-rich tract
 atttcttattt  TA-rich tract