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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatcctttttcttcctgtttctcttcttccgcatcgtcgttttcatcacttcacttaaattccaatttttttagGGTGCTGGTAAATCCGCAGTTCTCAACAGTTTGATTGGACATCCCGTTTTG

Basic information

species Glycine max
transcript GLYMA09G00430.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G00430.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv18s0089g00350.t01 (Vitis vinifera), 3'ss of exon 1
-------------gtaagtatcctttttcttcct-------gtttctcttcttccgca--tcgtcgttttcatcacttcacttaaattccaatttttttagGGTGCTGGTAAATCCGCAGTTCTCAACAGTTTGATTGGACATCCCGTTTTG
              ||||||| ||| |  |           |||| |  |  |  | |  || |  |  |  |  |     ||     | ||||  || |||||||||||||||| |||||| | |||||||||||||||||||| ||||||
tgttttttgtttcttaagtatgcttgtattatgcaacagtagtttttggttctatgaagatcctgatagttttttccctgtttctgcactaattactt-agGGTGCTGGTAAATCTGCAGTTTTGAACAGTTTGATTGGACATCCTGTTTTG

upper sequence: GLYMA09G00430.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv15s0107g00170.t01 (Vitis vinifera), 3'ss of exon 1
----------------------------------------gtaagt-atcctttttcttcctgtttctcttcttccgcatcgtcgttttcatcacttcacttaaattccaatttttttagGGTGCTGGTAAATCCGCAGTTCTCAACAGTTTGATTGGACATCCCGTTTTG---------
                                        |    | |   |||   |||| |||  ||||     |  ||  | ||||| | || |   |    ||  || | |     |||||||||||||| |||||| | |||| ||||||||||||||| |||||          
gtctatatgctaggtcgcggcgctgttggcggatgaagatgcggatgagaatttgagttccagttcttcttgcagGGGTTCAAC-TTTTCTTAACGTTGTTGCTCTTGGAAATGTC----GGTGCTGGTAAATCTGCAGTTTTAAACAATTTGATTGGACATCCTGTTTTACCTATTGGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcttcttccgcatcgtcgttttcatcacttcacttaaattccaatttttttagGGTGCTGGTAAATCCGCAGTTCTCAACAGTTTGATTGGACATCCCGTTTTG
                                              ttttttt  CT-rich tract
                                 acttaaattccaattt  TA-rich tract