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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtcttcaaatcgtattctattttgttattattttgctttgattccttttctcacttgttttctatacccttagGTCTCTGCACACACCTCTGCTGGGAAAACCGTGGTGGCATTGTATGCTATTGCCATGTCCCTCCGTAATGGCCAGCGCGTGGTCTACACTTCCCCTATCA

Basic information

species Glycine max
transcript GLYMA08G47700.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G47700.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S69_14V6.1 (Physcomitrella patens), 3'ss of exon 1
----------------gtctgtcttcaaatcgtattct------attttgttattattttgcttt---gattccttttctcacttgttttctatacccttagGTCTCTGCACACACCTCTGCTGGGAAAACCGTGGTGGCATTGTATGCTATTGCCATGTCCCTCCGTAATGGCCAGCGCGTGGTCTACACTTCCCCTATCA
                || || ||   | |   ||| |      | || |   |||  ||  ||    |||     |||| |  || || |  |   |  |||| ||||||||||| |||||||||||||| || || ||   |||||||||||||||| | || ||| |    ||| | |||||||| || || ||||| |
cttggatgctgctgaagtgtgcctcatattttgattttcaaagcaattcggcgttagattatttgcaagatagagcttctta--tgattccgttgtacacagGTATCTGCACACACATCTGCTGGGAAAACGGTTGTTGCGGAGTATGCTATTGCCATGGCACTTCGTGACAAACAGAGGGTGGTCTATACCTCTCCTATTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttgttattattttgctttgattccttttctcacttgttttctatacccttagGTCTCTGCACACACCTCTGCTGGGAAAACCGTGGTGGCATTGTATGCTATTGCCATGTCCCTCCGTAATGGCCAGCGCGTGGTCTACACTTCCCCTATCA
                             ttctcac  putative branch site (score: 2)
                       ttccttttctcacttg  CT-rich tract
      ttattattttgcttt  TA-rich tract