1 5' 3' | 2 5' 3' | 3 5' 3' |
gttcgattcgatgaaattgttttttagggtttattattttttttattgtgttggattttgagaaattgtttttgttttgttgattgaagATGGAGGAAGAGGCGAAGAGGATGGCAAGGGTTTCAGAGAGGAGCTTGCGACTTTGGCGAAGGAAGTGGCTAGGTTGGAGACGGTTCGTGTTTATGCAG
species | Glycine max |
transcript | GLYMA08G47180.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGGGGACGTCACCGAGAGGCTGATCGCTCTCTCCTCCACCGTCGTGCCAG ATGGAGGAAGAGGCGAAGAGGATGGCAAGGGTTTCAGAGAGGAGCTTGCGAEST: gi|18040145|gb|BM308431.1|BM308431
genomic: CGGGGACGTCACCGAGAGGCTGATCGCTCTCTCCTCCACCGTCGTGCCAGgttcgattcg ... ttgattgaagATGGAGGAAGAGGCGAAGAGGATGGCAAGGGTTTCAGAGAGGAGCTTGCGA
EST: CGGGGACGTCACCGAGAGGCTGATCGCTCTCTCCTCCACCGTCGTGCCAG ATGGAGGAAGAGGCGAAGAGGATGGCAAGGGTTTCAGAGAGGAGCTTGCGAEST: gi|6070458|gb|AW099845.1|AW099845
genomic: CGGGGACGTCACCGAGAGGCTGATCGCTCTCTCCTCCACCGTCGTGCCAGgttcgattcg ... ttgattgaagATGGAGGAAGAGGCGAAGAGGATGGCAAGGGTTTCAGAGAGGAGCTTGCGA
EST: CGGGGACGTCACCGAGAGGCTGATCGCTCTCTCCTCCACCGTCGTGCCAG ATGGAGGAAGAGGCGAAGAGGATGGCAAGGGTTTCAGAGAGGAGCTTGCGA
genomic: CGGGGACGTCACCGAGAGGCTGATCGCTCTCTCCTCCACCGTCGTGCCAGgttcgattcg ... ttgattgaagATGGAGGAAGAGGCGAAGAGGATGGCAAGGGTTTCAGAGAGGAGCTTGCGA
tattttttttattgtgttggattttgagaaattgtttttgttttgttgattgaagATGGAGGAAGAGGCGAAGAGGATGGCAAGGGTTTCAGAGAGGAGCTTGCGACTTTGGCGAAGGAAGTGGCTAGGTTGGAGACGGTTCGTGTTTATGCAG
tgttgat putative branch site (score: 4)
ttttgtt CT-rich tract
aaattgtttttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgattcgatgaaattgttttttagggtttattattttttttattgtgttggattttgagaaattgtttttgttttgttgattgaagATGGAGGAAGAGGCGAAGAGGATGGCAAGGGTTTCAGAGAGGAGCTTGCGACTTTGGCGAAGGAAGTGGCTAGGTTGGAGACGGTTCGTGTTTATGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA