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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttgcatattcaggccattgattgactatggtttgtttttaaaatacatttcatatatctttccgatgctgactttgggtgcatcttatctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCTACCTAGATATCTTTACTAATTATGTATCTCTCTATAATACCACTATGAA

Basic information

species Glycine max
transcript GLYMA08G46570.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G46570.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G25040.1 (Arabidopsis thaliana), 3'ss of exon 1
ttttgcatattcaggccattgattgactatggtttgtttttaaaatacatttcatatatctttccgatgctgac--tttgggtgcatcttatctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCTACCTAGATATCTTTACTAATTATGTATCTCTCTATAATACCACTATGAA
  ||| | ||  ||  | ||   | |   || |   || |     |     |  |   | | |  ||   |  |  |||   ||  |  ||| | | ||||||||| ||||||||||||||||||||||||||  | || |||||    || ||  | ||||| || || | || ||| ||||| || || ||| |||||||
--ttgaaaatgtagttcgttagatcagcttgctcgattctgtgtttgagaattttgcttttatgagaattttgcaatttttttgtttggtatatctttgcagGTGTTTCATTGAAGACTCAAGAACTCTATGCCATTGTCTTTGCGACGCGTTATTTGGATATTTTCACGAGTTTTGTGTCTCTGTACAACACCTCTATGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193347785|gb|FK313517.1|FK313517
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|7028432|gb|AW458215.1|AW458215
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|7693494|gb|AW761586.1|AW761586
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|207818212|gb|GD790215.1|GD790215
EST:     CGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|24136565|gb|BU927075.1|BU927075
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|31561500|gb|CD487338.1|CD487338
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|24136162|gb|BU926672.1|BU926672
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|207767184|gb|GD739596.1|GD739596
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGA
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGA
EST: gi|193561865|gb|FK519852.1|FK519852
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAAGAACTCTATGCACTTCGTTTTTGCTTGTCG
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAA-GAACTCTATGCACT-CGTTTTTGCTTGTCG
EST: gi|10232336|gb|BE801224.1|BE801224
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|208194630|gb|GD988501.1|GD988501
EST:     CGTCCTTCTTTCTTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTTCGC
genomic: CGTCCTTC-TTC-TCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTG-TCGC
EST: gi|298188845|gb|HO035538.1|HO035538
EST:     CAGCGTCCTCGTCCTTCTTCCCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|209715072|gb|BW677115.1|BW677115
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAGCTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|208060969|gb|GD857549.1|GD857549
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|13252025|gb|BG362928.1|BG362928
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|11412647|gb|BF424658.1|BF424658
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|207799923|gb|GD770602.1|GD770602
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|151401246|gb|EV271060.1|EV271060
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|7588285|gb|AW704084.1|AW704084
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAGCTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
EST: gi|298185620|gb|HO030833.1|HO030833
EST:     CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCG                         GTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT
genomic: CAGCGTCCTCGTCCTTCTTCTCAAGATCCACACCATCAAATCCTGCGCCGgtcggtacct ... ctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacatttcatatatctttccgatgctgactttgggtgcatcttatctgtgtgcagGTGTCTCATTGAAGACTCAAGAACTCTATGCACTCGTTTTTGCTTGTCGCTACCTAGATATCTTTACTAATTATGTATCTCTCTATAATACCACTATGAA
                      tgctgac  putative branch site (score: 2)
                                       tcttatct  putative PPT
        atatatcttt  TA-rich tract