1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aatatttaatggggtccattcttttttttttaaaaaaatgggtttgcttcactttgcatctgcagtgtttgtccactgttttctgcttcctatttggcagAGTTTTTATCTGATCTCTGGAGAAATATGGCTGCCAATTTCTGGACATCATCTCATTA
species | Glycine max |
transcript | GLYMA08G46170.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTCTCGCAAGTCCAGCGATAACAGCGTCGTTCTTCAAAGAACTCAAACG AGTTTTTATCTGATCTCTGGAGAAATATGGCTGCCAATTTCTGGACATCAT
genomic: TTTCTCGCAAGTCCAGCGATAACAGCGTCGTTCTTCAAAGAACTCAAACGgtaacctttc ... tatttggcagAGTTTTTATCTGATCTCTGGAGAAATATGGCTGCCAATTTCTGGACATCAT
gcttcactttgcatctgcagtgtttgtccactgttttctgcttcctatttggcagAGTTTTTATCTGATCTCTGGAGAAATATGGCTGCCAATTTCTGGACATCATCTCATTA
ttttctgcttcctatt CT-rich tract
tattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatatttaatggggtccattcttttttttttaaaaaaatgggtttgcttcactttgcatctgcagtgtttgtccactgttttctgcttcctatttggcagAGTTTTTATCTGATCTCTGGAGAAATATGGCTGCCAATTTCTGGACATCATCTCATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - atggggt
- - - - - - - -ccattct
- - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - -gggtttg
- - - - - - - - - - - - - - - - - - - - - - - cttcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - catctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt