1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cattaataaaaaggtagaacatttaattttggatcaatatttaatggggtccattcttttttttttaaaaaaatgggtttgcttcactttgcatctgcagTGTTTGTCCACTGTTTTCTGCTTCCTATTTGGCAGAGTTTTTATCTGATCTCTGGAGAAATATGGCTGCCAATTTCTGGACATCATCTCATTA
species | Glycine max |
transcript | GLYMA08G46170.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTTCTCGCAAGTCCAGCGATAACAGCGTCGTTCTTCAAAGAACTCAAACG TGTTTGTCCACTGTTTTCTGCTTCCTATTTGGCAGAGTTTTTATCTGATCTEST: gi|16997247|gb|BM086619.1|BM086619
genomic: TTTCTCGCAAGTCCAGCGATAACAGCGTCGTTCTTCAAAGAACTCAAACGgtaacctttc ... gcatctgcagTGTTTGTCCACTGTTTTCTGCTTCCTATTTGGCAGAGTTTTTATCTGATCT
EST: TTTCTCGCAAGTCCAGCGATAACAGCGTCGTTCTTCAAAGAACTCAAACG TGTTTGTCCACTGTTTTCTGCTTCCTATTTGGCAGAGTTTTTATCTGATCT
genomic: TTTCTCGCAAGTCCAGCGATAACAGCGTCGTTCTTCAAAGAACTCAAACGgtaacctttc ... gcatctgcagTGTTTGTCCACTGTTTTCTGCTTCCTATTTGGCAGAGTTTTTATCTGATCT
ggggtccattcttttttttttaaaaaaatgggtttgcttcactttgcatctgcagTGTTTGTCCACTGTTTTCTGCTTCCTATTTGGCAGAGTTTTTATCTGATCTCTGGAGAAATATGGCTGCCAATTTCTGGACATCATCTCATTA
attcttttttttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattaataaaaaggtagaacatttaattttggatcaatatttaatggggtccattcttttttttttaaaaaaatgggtttgcttcactttgcatctgcagTGTTTGTCCACTGTTTTCTGCTTCCTATTTGGCAGAGTTTTTATCTGATCTCTGGAGAAATATGGCTGCCAATTTCTGGACATCATCTCATTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA