1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tattttttgccattactcttttctagtaattggtacacaatttatccatgttttctcataatttgaccctgcttttcttactattttgtcaaactaacagCTTTATGAAGATGACATGTGCCTCTGCATATTGGATACAAGTCCACTGAGTCATGG
species | Glycine max |
transcript | GLYMA08G45960.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACGATTGCGTTTTCTGCAAGATTATCCGTGACCAATCACCAGCTGTCAAG CTTTATGAAGATGACATGTGCCTCTGCATATTGGATACAAGTCCACTGAGTEST: gi|254331675|gb|GR846092.1|GR846092
genomic: ACGATTGCGTTTTCTGCAAGATTATCCGTGACCAATCACCAGCTGTCAAGgtacaccagt ... aaactaacagCTTTATGAAGATGACATGTGCCTCTGCATATTGGATACAAGTCCACTGAGT
EST: ACGATTGCGTTTTCTGCAAGATTATCCGTGACCAATCACCAGCTGTCAAG CTTTATGAAGATGACATGTGCCTCTGCATATTGGATACAAGTCCACTGAGTEST: gi|26047413|gb|CA784215.1|CA784215
genomic: ACGATTGCGTTTTCTGCAAGATTATCCGTGACCAATCACCAGCTGTCAAGgtacaccagt ... aaactaacagCTTTATGAAGATGACATGTGCCTCTGCATATTGGATACAAGTCCACTGAGT
EST: ACGATTGCGTTTTCTGCAAGATTATCCGTGACCAATCACCAGCTGTCAAG CTTTATGAAGATGACATGTGCCTCTGCATATTGGATACAAGTCCACTGAGTEST: gi|120530962|gb|EH259095.1|EH259095
genomic: ACGATTGCGTTTTCTGCAAGATTATCCGTGACCAATCACCAGCTGTCAAGgtacaccagt ... aaactaacagCTTTATGAAGATGACATGTGCCTCTGCATATTGGATACAAGTCCACTGAGT
EST: ACGATTGCGTTTTCTGCAAGATTATCCGTGACCAATCACCAGCTGTCAAG CTTTATGAAGATGACATNGTGC
genomic: ACGATTGCGTTTTCTGCAAGATTATCCGTGACCAATCACCAGCTGTCAAGgtacaccagt ... aaactaacagCTTTATGAAGATGACAT-GTGC
ccatgttttctcataatttgaccctgcttttcttactattttgtcaaactaacagCTTTATGAAGATGACATGTGCCTCTGCATATTGGATACAAGTCCACTGAGTCATGG
ttcttac putative branch site (score: 2)
ttttcttactatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattttttgccattactcttttctagtaattggtacacaatttatccatgttttctcataatttgaccctgcttttcttactattttgtcaaactaacagCTTTATGAAGATGACATGTGCCTCTGCATATTGGATACAAGTCCACTGAGTCATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - ttttgcc
- - - - - - - - - - - - - - - - - - - - - - -ccatgtt