Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctcttcttcccaaaccctagttttttatattgctgtcgtatcttctctctgctacgtcgttttttgttttgcgttcgttgccgaagtcgttttaatttcttattgtcgcttatgtgtattcttcgttgcttcatttcgctttgcgccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT

Basic information

species Glycine max
transcript GLYMA08G45770.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os07g42950.1 (Oryza sativa), 3'ss of exon 1
gttctcttcttcccaaaccctagttttttatattgctgtcgtatcttctctctgctacgtcgtttttt-gttttgcgttcgttgccgaagtcgttttaatttcttattgtcgcttatgtgtattcttcgttgcttcatttcgctttgcgccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT
                                     | ||   ||  || | | | |    |      | |  ||    | |      || |  |||  || || || |||  |  |||  ||||   | |  |  ||||    | ||  |||   |||||||||||||||| || ||||| || ||||||||||||||||||||||| ||||| | ||| ||
---------------------------------gtaagacgctcctcgtcgccgttgctggatcccccagatgagctagggattttatggtagggttagatttttttt-tcg--tgggtggcttctgattcgtgtggtttccgccttcgttttc---agTTCAACATCGCGAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCT

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 3'ss of exon 1
gttctcttcttcccaaaccctagttttttatattgctgtcgtatcttctctctgctacgtcgttttttgttttgcgttcgttgccgaagtcgttttaatttcttattgtcgcttatgtgtattcttcgttgcttcatttcgctttgcgccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT
                                  |    | | ||| |||    |  |  ||         | |   || | |     |||    |  ||  || |||| ||     |  ||      |||        |   |   |  ||  ||||||||||||||| || || ||||| || ||||||||||||||||||||||| ||||| | ||| ||
----------------------------------gtacccatttctcctcctcccctccccgcgggcgacgtggtcgtc-tcgatccggtccggctggttgtttcttgtagcgcggtttgatctgattttgtggtcgccctgatgatgttttgcgcagTTCAACATCGCCAACCCGACCACCGGGTGCCAGAAGAAGCTCGAGATCGATGACGACCAGAAGCT

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 1
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 1
gttctcttcttcccaaaccctagttttttatattgctgtcgtatcttctctctgctacgtcgttttttgttttgcgttcgttgccgaagtcgttttaatttcttattgtcgcttat--gtgtattcttcgttgcttcatttcgctttgcgccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT
                                                                         | |   |  | |||| |||  |  | |    |||  | | |||  | || | ||| | |      ||||   || |  | | | ||||||||| | |||||||| || |||||||||||||||||||||||||||||||| || | ||||||
-------------------------------------------------------------------------gtgcgtgacggcgaaatcgaatagactctacatttgctcgtattcgagtttcctttgctaacctttttcatgtttcttcgttt-cagTTCAACGTTGCGAATCCAACTACTGGATGCCAGAAGAAGCTCGAGATCGACGATGACCAGAAACT

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 1
gttctcttcttcccaaaccctagttttttatattgctgtcgtatcttctctctgctacgtcgttttttgttttgcgttcgttgccgaagtcgttttaatttcttattgtcgcttatgtgtattcttcgttgcttcatttcgctttgcgccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT
                                                     |   |  | | ||||  ||  | |   || | |   ||||||  || ||||  |||   ||   |  ||||        |  |||| | |||| | |    |||||||||| |||| ||||| ||||| || || || ||||| ||||||||||| |||||||  |||||
-----------------------------------------------------gtggctccatctttttcttctcatcaatt-ctgttctcgttt--atctctt--tgttatttcgtttgattc------aatcgattttggtttgtgtc----gcagTTCAACGTCGCCAATCCGACCACCGGGTGTCAAAAGAAACTCGAGATCGATGACGATCAAAAACT

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 1
gttctcttcttcccaaaccctagttttttatattgctgtcgtatcttctctctgctacgtcgttttttgttttgcgttcgttgccgaagtcgttttaatttcttattgtcgctta-tgtgtattcttcgttgcttcatttcgctttgcgccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT
                                                                 || | |   ||                |  | || ||      |   | | ||| |      | |   || || |  || || |  || |||||||||| ||||||||||| ||||| ||||||||||||||||| ||||| ||||| || | ||||||
----------------------------------------------------------------gttcgatccacgaaaaccaatttgcaattcatgatctccggccattcttcaatgtttcaaaaccctaatttgatatt-ctgtgtgtgttttgcagTTCAATATCGCGAATCCGACCACAGGATGCCAGAAGAAGCTTGAGATTGACGATGACCAGAAACT

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 1
gttctcttcttcccaaaccctagttttttatattgctgtcgtatcttctctctgctacgtcgttttttgttttgcgttcgttgccgaagtcg--ttttaatttcttattgtcgcttatgtgtattcttcgttgcttcatttcgctttgcgccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT
                                                     | || |  |  |  |   ||  || | ||    ||  |    | | || | ||||  |   |||  |  |||  ||  |||||  | | |  |         |||||||||| || |||||||| || || || || ||||| |||||||| ||||||||||| | ||||||
-----------------------------------------------------gtta-gatgaatcataccttatgt-cattatgaaaacctacctcttatcttttataattaattaatt--atttatctgtgctttttctgggct---------tgcagTTCAATATTGCGAATCCTACGACAGGGTGTCAGAAAAAGCTCGAAATCGACGACGACCAGAAACT

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 1
gttctcttcttcccaaaccctagttttttatattgctgtcgtatcttctctctgctacgtcgttttttgttttgcgttcgttgccgaagtcgttttaatttcttattgtcgcttatgtgtattcttcgttgcttcatttcgctttgcgccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT
                                                                 |||   |  |        || || | | |     ||  | |||   ||  |      |        ||| | | | || | ||| ||  ||||||||| ||||| ||||| || || ||||| ||||||||||||||||| || ||||||| ||||||
----------------------------------------------------------------gttttcctctcaccaaagccctaatttgatgctgctttctcttgattctcttcaactcttggtaaatcttaactcctctcttcgcttttcgcagTTCAATATCGCAAATCCTACTACAGGATGTCAGAAGAAGCTCGAGATTGATGACGATCAGAAACT

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S253_38V6.1 (Physcomitrella patens), 3'ss of exon 1
gttctcttcttcccaaaccctagttttttatattgctgtcgtat-cttctctctgctacgtcgttttttgttttgcgttcgttgccgaagtcgttttaatttcttattgtcgcttatgtgtattcttcgttgcttcatttcgctttgcgccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT
                              |    || | | |  ||||  ||     |   ||| | |  || || | || |||     ||  | ||  |   | ||  || |          |||| |   ||  || || |     |   |||||| |||||||||| || ||||| || || |||||||||||| | |||||||| |||||    || ||
-----------------------------gtgagactcttgcacgcttccttccatctccatgttctattgttcgcctgcgctgc-----tctctgtacctctctgtttccggt----------cttcctaatttggttgcgttc----ctgactgcagCTCAACATCGCCAACCCCACTACGGGGTGCCAGAAGAAGGTTGAGATCGATGACGACGCTAAGCT

upper sequence: GLYMA08G45770.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S31_322V6.1 (Physcomitrella patens), 3'ss of exon 1
gttctcttcttcccaaaccctagttttttatattgctgtcgtatcttctctctgctacgtcgttttttgttttgcgttcgttgccgaagtcgttttaatttcttattgtcgcttatgtgtattcttcgttgcttcatttcgctttgcgccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT
                      || |  | ||  |||  || || ||||||||  |||   | |  |  | ||||   |||| | |  || |  ||| |||   |    |    || || | | || |      |     |||| ||  |||  |||| |||| ||||| ||||||||||| || |||||||||||| |||||||||| |||||    || ||
----------------------gtgtgctgtac-gct-ccgcatattctctctcgtacaatgctgctgatgttgc---cgttccaggggtggaatta-ttttggacgtgcttgcatttgcagtgttggagaggactaactgctt-gcttcttgcgcagCTCAATATCGCTAATCCCACCACAGGGTGCCAGAAGAAGGTCGAGATCGATGACGACGCTAAGCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306899|gb|FK002621.1|FK002621
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|207706975|gb|GD689035.1|GD689035
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|26058968|gb|CA801882.1|CA801882
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|254318039|gb|GR832207.1|GR832207
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|298165755|gb|HO008726.1|HO008726
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCATTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|5753653|gb|AI960940.1|AI960940
EST:     TCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: TCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|193517839|gb|FK473058.1|FK473058
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|4436991|gb|AI522856.1|AI522856
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|151413141|gb|EV282949.1|EV282949
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|209703578|gb|BW678280.1|BW678280
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|208056622|gb|GD850339.1|GD850339
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|193398689|gb|FK361699.1|FK361699
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|192332922|gb|FK025019.1|FK025019
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|192333814|gb|FK025075.1|FK025075
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|192319434|gb|FK005874.1|FK005874
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|16106410|gb|BI894150.1|BI894150
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|151396097|gb|EV265974.1|EV265974
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|5605874|gb|AI899972.1|AI899972
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|213594190|gb|DB963787.1|DB963787
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|213597920|gb|DB958301.1|DB958301
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|192319433|gb|FK005873.1|FK005873
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|298171428|gb|HO016460.1|HO016460
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|298180050|gb|HO025265.1|HO025265
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|213603401|gb|DB970470.1|DB970470
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|192327797|gb|FK022398.1|FK022398
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|151412215|gb|EV282027.1|EV282027
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGACCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|213607341|gb|DB957149.1|DB957149
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|151413002|gb|EV282810.1|EV282810
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|209714918|gb|BW682083.1|BW682083
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|298195035|gb|HO043563.1|HO043563
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|192332466|gb|FK024227.1|FK024227
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAAATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
EST: gi|298172900|gb|HO019884.1|HO019884
EST:     CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAG                         TTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC
genomic: CCCTGAGAGAGCTCGTCGCGGCGGTTGCAGAAGAAGATTGCAAGATGAAGgttctcttct ... ccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattgtcgcttatgtgtattcttcgttgcttcatttcgctttgcgccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT
                                           cgccttct  CT-rich tract
                tattctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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gttctcttcttcccaaaccctagttttttatattgctgtcgtatcttctctctgctacgtcgttttttgttttgcgttcgttgccgaagtcgttttaatttcttattgtcgcttatgtgtattcttcgttgcttcatttcgctttgcgccttctgcagTTCAACATCGCGAATCCCACCACTGGATGCCAGAAGAAGCTCGAGATCGACGACGATCTGAAACT

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