1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atttggaagacttaattatgctatgctacttttgttgaaaaaaaaaagaaattcataaagcatatatactagtactcatcatttgaatttcaaaatgcagAAGAAGAAGATCCCCATGGCCCCAAATTTCCAACGAAGCACAACATCAGGATGGCAATGTATTGGCTTGCACAAGGATGTCAACCTGGAGACTCCCTGGT
species | Glycine max |
transcript | GLYMA08G45470.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTCATCAACAAGTTCAGCTTTCCAGAATCTTCCATCATCATGCTCACGG AAGAAGAAGATCCCCATGGCCCCAAATTTCCAACCAAGCACAACATCAGGAEST: gi|21887666|gb|BQ740879.1|BQ740879
genomic: CCTCATCAACAAGTTCAGCTTTCCAGAATCTTCCATCATCATGCTCACCGgtacgtacgt ... caaaatgcagAAGAAGAAGATCCCCATGGCCCCAAATTTCCAACGAAGCACAACATCAGGA
EST: CCTCATCAACAAGTTCAGCTTTCCAGAATCTTCCATCATCATGCTCACCG AAGAAGAAGATCCCCATGGCCCCAAATTTCCAACGAAGCACAACATCAGGAEST: gi|213598030|gb|DB972218.1|DB972218
genomic: CCTCATCAACAAGTTCAGCTTTCCAGAATCTTCCATCATCATGCTCACCGgtacgtacgt ... caaaatgcagAAGAAGAAGATCCCCATGGCCCCAAATTTCCAACGAAGCACAACATCAGGA
EST: CCTCATCAACAAGTTCAGCTTTCCAGAATCTTCCATCATCATGCTCACCG AAGAAGAAGATCCCCATGGCCCCAAATTTCCAACGAAGCACAACATCAGGAEST: gi|22540279|gb|BU090122.1|BU090122
genomic: CCTCATCAACAAGTTCAGCTTTCCAGAATCTTCCATCATCATGCTCACCGgtacgtacgt ... caaaatgcagAAGAAGAAGATCCCCATGGCCCCAAATTTCCAACGAAGCACAACATCAGGA
EST: CCTCATCAACAAGTTCAGCTTTCCAGAATCTTCCATCATCATGCTCACCG AAGAAGAAGATCCCCATGGCCCCAAATTTCCAACGAAGCACAACATCAGGA
genomic: CCTCATCAACAAGTTCAGCTTTCCAGAATCTTCCATCATCATGCTCACCGgtacgtacgt ... caaaatgcagAAGAAGAAGATCCCCATGGCCCCAAATTTCCAACGAAGCACAACATCAGGA
aagaaattcataaagcatatatactagtactcatcatttgaatttcaaaatgcagAAGAAGAAGATCCCCATGGCCCCAAATTTCCAACGAAGCACAACATCAGGATGGCAATGTATTGGCTTGCACAAGGATGTCAACCTGGAGACTCCCTGGT
atttgaatttcaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttggaagacttaattatgctatgctacttttgttgaaaaaaaaaagaaattcataaagcatatatactagtactcatcatttgaatttcaaaatgcagAAGAAGAAGATCCCCATGGCCCCAAATTTCCAACGAAGCACAACATCAGGATGGCAATGTATTGGCTTGCACAAGGATGTCAACCTGGAGACTCCCTGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - ctatgct
- - - - - - - - - - - - - - - - tgttgaa
- - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatata