1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gctttgatattgtaattgttgttgctttgttggtgttattactactgcttgagtgtggctgatggagatatgggtttgttgtttattttgaattaaacagGAATCGGTAAAATGCATGCGCCATTCAATGAGAACTTTTCTTACTACAGAGGATGTGGATACTGCACTTGCATTGAGAAATTTGGAG
species | Glycine max |
transcript | GLYMA08G43490.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCTCGCTCTCGCTCCCGATCTCGAATATCGCATTCGCGAAATCATGCAG GAATCGGTAAAATGCATGCGCCATTCAATGAGAACTTTTCTTACTACAGAGEST: gi|10232940|gb|BE801828.1|BE801828
genomic: CCCTCGCTCTCGCTCCCGATCTCGAATATCGCATTCGCGAAATCATGCAGgtacccccat ... aattaaacagGAATCGGTAAAATGCATGCGCCATTCAATGAGAACTTTTCTTACTACAGAG
EST: CCCTCGCTCTCGCTTCCGATCTCGAATATCGCATTCGCGAAATCATGCAG GAATCGGTAAAATGCATGCGCCATTCAATGAGAACTTTTCTTACTACAGAG
genomic: CCCTCGCTCTCGCTCCCGATCTCGAATATCGCATTCGCGAAATCATGCAGgtacccccat ... aattaaacagGAATCGGTAAAATGCATGCGCCATTCAATGAGAACTTTTCTTACTACAGAG
tgcttgagtgtggctgatggagatatgggtttgttgtttattttgaattaaacagGAATCGGTAAAATGCATGCGCCATTCAATGAGAACTTTTCTTACTACAGAGGATGTGGATACTGCACTTGCATTGAGAAATTTGGAG
ggctgat putative branch site (score: 4)
tttgttgtttattttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctttgatattgtaattgttgttgctttgttggtgttattactactgcttgagtgtggctgatggagatatgggtttgttgtttattttgaattaaacagGAATCGGTAAAATGCATGCGCCATTCAATGAGAACTTTTCTTACTACAGAGGATGTGGATACTGCACTTGCATTGAGAAATTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - -tgttgct
- - - - - - - - - - - - - - gttggtg
- - - - - - - - - - - - - - - - - - - - -ctactgc
- - - - - - - - - - - - - - - - - - - - - - - - - gagtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatggag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtttg