1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggtgttggccttataatgaaatcccactttagttatcactttttttttggcaattcatgattaaattaaaagattctaacagttgatattgcctgttcagAATGACATCCGCAAGAACCCTTCATTCAGATCACAGTTTCATGAGATGTGTGCTAAAGTTGGAGTAGACCCCTTGGCCTCAAACAAGGGTTTCTGGTCAG
species | Glycine max |
transcript | GLYMA08G42650.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCTTGCCACCTTTCGCTCTCAGCTCGAAGATTTCGCTCGCAAACACAAG AATGACATCCGCAAGAACCCTTCATTCAGATCACAGTTTCATGAGATGTGTEST: gi|4314023|gb|AI461142.1|AI461142
genomic: AGCTTGCCACCTTTCGCTCTCAGCTCGAAGATTTCGCTCGCAAACACAAGgtgaattcgt ... gcctgttcagAATGACATCCGCAAGAACCCTTCATTCAGATCACAGTTTCATGAGATGTGT
EST: AGCTTGCCACCTTTCGCTCTCAGCTCGAAGATTTCGCTCGCAAACACAAG AATGACATCCGCAAGAACCCTTCATTCAGATCACAGTTTCATGAGATGTGT
genomic: AGCTTGCCACCTTTCGCTCTCAGCTCGAAGATTTCGCTCGCAAACACAAGgtgaattcgt ... gcctgttcagAATGACATCCGCAAGAACCCTTCATTCAGATCACAGTTTCATGAGATGTGT
tttggcaattcatgattaaattaaaagattctaacagttgatattgcctgttcagAATGACATCCGCAAGAACCCTTCATTCAGATCACAGTTTCATGAGATGTGTGCTAAAGTTGGAGTAGACCCCTTGGCCTCAAACAAGGGTTTCTGGTCAG
cctgttc CT-rich tract
aattcatgattaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtgttggccttataatgaaatcccactttagttatcactttttttttggcaattcatgattaaattaaaagattctaacagttgatattgcctgttcagAATGACATCCGCAAGAACCCTTCATTCAGATCACAGTTTCATGAGATGTGTGCTAAAGTTGGAGTAGACCCCTTGGCCTCAAACAAGGGTTTCTGGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
-gtgttgg
- - - - - - - - - - -tcccact
- - - - - - - - - - - - - - - - - - - - - - - - - - -ttcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaattaaa