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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttcttgtttactcactcactctccctttctatctcaattttttttatccgtgcacatgagctgattactattgtttgaattgtacttgattgggataaagGAGGTGAAGATGTCGACTCCGGCTAGGAAGAGACTGATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAAGACA

Basic information

species Glycine max
transcript GLYMA08G40860.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G40860.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os05g08960.1 (Oryza sativa), 3'ss of exon 1
ttcttgtttactcactcactctccctttctatctcaattttttttatccgtgcacatgagctgattactattgtttgaattgt-acttgattgggataaagGAGGTGAAGATGTCGACTCCGGCTAGGAAGAGACTGATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAAGACA--
   | || |    | |   | ||       | || ||   | |   |    |      |     |   | | | ||   | || ||||| |    | | |||  ||||| |||||||| || || ||||||||  ||||||||||||| ||| || ||   || |||||||| |||||||| |||||||| || || ||||  
-attggtctggctagtaggtgtcatgggtaaactaaagaatctcagtgtaggtttcccattccttctatttagcttatttggtgacttggtatctacacagG--GTGAATATGTCGACGCCAGCAAGGAAGAGGTTGATGAGGGATTTCAAACGACTGATGCAGGATCCTCCAGCTGGCATAAGTGGGGCCCCACAGGACAAC

upper sequence: GLYMA08G40860.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G110983_T01 (Zea mays), 3'ss of exon 1
------------------------------------------ttcttgtttactcactcactctccctttctatctcaattttttttatccgtgcacatgagctgattactattgtttgaattgtacttgattgggataaagGAGGTGAAGATGTCGACTCCGGCTAGGAAGAGACTGATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAAGACA
                                            ||  ||    |||   ||    |    |  |      |   | ||   | |    || |   ||        ||||  ||||  || | | |    |  |   |  |||||||||||| || |||||||| |||||||||||||| ||  | |||   || || ||||| || ||||| ||||| || || || |   
gtagttttttccctcaaattttgttcgagttgttaatcctgcacctgattcttgcacgtgctggggcggggtggcggcggatcgatgatagattcgtgcgatccttttggctcatgttgaggtgtatatg-tcgtgcagGAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTCAAGCGGTTGATGCAGGACCCTCCGGCCGGCATAAGTGGCGCCCCGCAGG---

upper sequence: GLYMA08G40860.1 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G110983_T03 (Zea mays), 3'ss of exon 1
----ttcttgtttactcactcactctccctttctatctcaattttttttatccgtgcacatgagctgattactattgtttgaattgtacttgattgggataaagGAGGTGAAGATGTCGACTCCGGCTAGGAAGAGACTGATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAAGACA
      ||  ||    |||   ||    |    |  |      |   | ||   | |    || |   ||        ||||  ||||  || | | |    |  |   |  |||||||||||| || |||||||| |||||||||||||| ||  | |||   || || ||||| || ||||| ||||| || || || |   
ctgcacctgattcttgcacgtgctggggcggggtggcggcggatcgatgatagattcgtgcgatccttttggctcatgttgaggtgtatatg-tcgtgcagGAACATCCGGGGATGTCGACTCCTGCGAGGAAGAGGCTGATGAGGGATTTCAAGCGGTTGATGCAGGACCCTCCGGCCGGCATAAGTGGCGCCCCGCAGG---

upper sequence: GLYMA08G40860.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv01s0026g01770.t01 (Vitis vinifera), 3'ss of exon 2
ttcttgtttactcactcactctccctttctatctcaattttttttatccgtgcacatga--gctgattactattgtttgaattgtacttgattgggataaagGAGGTGAAGATGTCGACTCCGGCTAGGAAGAGACTGATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAAGACA
||      ||  ||  || | | |  || ||  |  | |   |  ||   |  | ||||   |  |  | | ||||||   |||   |   || ||| | ||| ||||| |||||||||||| || |||||||| || ||||||||||| || || |||||||| ||||| ||||| ||||||||||| ||||| |||||||
ttgagtgataaacatgcattatactattgtaatt-gactcactgcattgtttaagatgattaccaagcaatgttgttttggttggcttctctttgga-atagGCGGTGAGGATGTCGACTCCAGCCAGGAAGAGGCTCATGAGGGATTTCAAGAGGTTGCAACAGGATCCACCTGCAGGCATCAGTGGTGCTCCTCAAGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atccgtgcacatgagctgattactattgtttgaattgtacttgattgggataaagGAGGTGAAGATGTCGACTCCGGCTAGGAAGAGACTGATGAGGGATTTTAAAAGATTGCAACAAGATCCTCCTGCTGGCATCAGTGGGGCTCCCCAAGACA
                  attactatt  TA-rich tract