1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttattttttattcttttgtaactgcttattgaaaataataatttgaaaagggactttgttgatttgggtttggattaatttggtttggtttgtgggacagATGGAATGGGGACAGCTGAGTGGAGAGCTGCTAAGAGTCCTGCTTATTACAAGCGTGGGGATTATGTTCCTGGATTGAAG
species | Glycine max |
transcript | GLYMA08G40380.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCCGCTCTTTGGGATCTCCCCTCCATTTTGGTCTGCGAGAATAATCACT ATGGAATGGGGACAGCTGAGTGGAGAGCTGCTAAGAGTCCTGCTTATTACAEST: gi|6725662|gb|AW310061.1|AW310061
genomic: TTCCGCTCTTTGGGATCTCCCCTCCATTTTGGTCTGCGAGAATAATCACTgtgagtatga ... tgtgggacagATGGAATGGGGACAGCTGAGTGGAGAGCTGCTAAGAGTCCTGCTTATTACA
EST: TTCCGCTCTTTGGGATCTCCCCTCCATTTTGGTCTGCGAGAATAATCACT ATGGAATGGGGACAGCTGAGTGGAGAGCTGCTAAGAGTCCTGCTTATTACAEST: gi|10848193|gb|BF070736.1|BF070736
genomic: TTCCGCTCTTTGGGATCTCCCCTCCATTTTGGTCTGCGAGAATAATCACTgtgagtatga ... tgtgggacagATGGAATGGGGACAGCTGAGTGGAGAGCTGCTAAGAGTCCTGCTTATTACA
EST: TTCCGCTCTTTGGGATCTCCCCTCCATTTTGGTCTGCGAGAATAATCACT ATGGAATGGGGACAGCTGAGTGGAGAGCTGCTAAGAGTCCTGCTTATTACAEST: gi|7591537|gb|AW707268.1|AW707268
genomic: TTCCGCTCTTTGGGATCTCCCCTCCATTTTGGTCTGCGAGAATAATCACTgtgagtatga ... tgtgggacagATGGAATGGGGACAGCTGAGTGGAGAGCTGCTAAGAGTCCTGCTTATTACA
EST: TTCCGCTCTTTGGGATCTCCCCTCCATTTTGGTCTGCGAGAATAATCACT ATGGAATGGGGACAGCTGAGTGGAGAGCTGCTAAGAGTCCTGCTTATTACAEST: gi|7692225|gb|AW760338.1|AW760338
genomic: TTCCGCTCTTTGGGATCTCCCCTCCATTTTGGTCTGCGAGAATAATCACTgtgagtatga ... tgtgggacagATGGAATGGGGACAGCTGAGTGGAGAGCTGCTAAGAGTCCTGCTTATTACA
EST: TTCCGCTCTTTGGGATCTCCCCTCCATTTTGGTCTGCGAGAATAATCACT ATGGAATGGGGACAGCTGAGTGGAGAGCTGCTAAGAGTCCTGCTTATTACA
genomic: TTCCGCTCTTTGGGATCTCCCCTCCATTTTGGTCTGCGAGAATAATCACTgtgagtatga ... tgtgggacagATGGAATGGGGACAGCTGAGTGGAGAGCTGCTAAGAGTCCTGCTTATTACA
aaaagggactttgttgatttgggtttggattaatttggtttggtttgtgggacagATGGAATGGGGACAGCTGAGTGGAGAGCTGCTAAGAGTCCTGCTTATTACAAGCGTGGGGATTATGTTCCTGGATTGAAG
gattaat putative branch site (score: 3)
attaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattttttattcttttgtaactgcttattgaaaataataatttgaaaagggactttgttgatttgggtttggattaatttggtttggtttgtgggacagATGGAATGGGGACAGCTGAGTGGAGAGCTGCTAAGAGTCCTGCTTATTACAAGCGTGGGGATTATGTTCCTGGATTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - actgctt
- - - - - - - - - - - - - - - -aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtttgg