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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagagattctattcccaatttccttgaaacgctctttccctctttccgttcactcgctccgttatgaagttcaggctgcgattcaattttgtacttttcagtttctcaatctgtgacctatgtgaattggagttaattagggttttcaaattcggtcccgaattgagtttgtgcgttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT

Basic information

species Glycine max
transcript GLYMA08G40200.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G40200.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G121942_T03 (Zea mays), 3'ss of exon 2
gtagagattctattcccaatttccttgaaacgctctttccctctttccgttcactcgctccgttatgaagttcaggctgcgattcaattttgtacttttcagtttctcaatctgtgacctatgtgaattggagttaattagggttttcaaattcggtcccg--aattgagtttgtgcgttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT
                                                                      || | | | | | |  || ||  | | |||||| | ||  || ||  |              |||   |    ||||||| | |  | | |  ||   | |||     | ||  | |||| || |||||||| ||||| || || |||||||||||||| ||||||||||||||||| || || ||||| ||||||   |||||
----------------------------------------------------------------------ttaaaggttcaactggatctt--agtcttcagtgt-tcgttcagtagct-----------aggttttctgacattttcaa-tgcaatactgctaacacaatttac---tatttgaaagGCTAGCGATAGGTTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAATATGTTGGTACAGGGCATGCTGATTTGTCTAGATT

upper sequence: GLYMA08G40200.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G121942_T01 (Zea mays), 3'ss of exon 2
gtagagattctattcccaatttccttgaaacgctctttccctctttccgttcactcgctccgttatgaagttcaggctgcgattcaattttgtacttttcagtttctcaatctgtgacctatgtgaattggagttaattagggttttcaaattcggtcccg--aattgagtttgtgcgttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT
                                                                                | ||||| |   |     | ||| | ||| | |  |  |  |   |  | | |||   |    ||||||| | |  | | |  ||   | |||     | ||  | |||| || |||||||| ||||| || || |||||||||||||| ||||||||||||||||| || || ||||| ||||||   |||||
--------------------------------------------------------------------------------ggttcaactggat----cttagtct-tcagtgttcgttcagt---agctag-gttttctgacattttcaa-tgcaatactgctaacacaatttac---tatttgaaaggctagCGATAGGTTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAATATGTTGGTACAGGGCATGCTGATTTGTCTAGATT

upper sequence: GLYMA08G40200.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G106574_T01 (Zea mays), 3'ss of exon 2
gtagagattctattcccaatttccttgaaacgctctttccctctttccgttcactcgctccgttatgaagttcaggctgcgattcaattttgtacttttcagtttctcaatctgtgacctatgtgaattggagttaattagggttttcaaattcggtcccgaattgagtttgtgcgttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT
                                                                            ||  |  |||| |   |     | ||| | ||| | |     | ||   |  | |  ||  | |   |||    |     |  | ||   | |||   | ||||| |  ||| || ||||| || ||||| || || |||||||||||||| ||||||||||||||||| || || ||||| ||||||   |||||
---------------------------------------------------------------------------actttggctcaactggat----cttagtct-tcactgttcattcaat---agctaggtttgctgacattttgaggacaatatttctaacacaatttac-cattttaaa--gGCTAGCGATAGATTCAACATAAACTCTCAGCTTGAGCATCTTCAAGCCAAATATGTTGGTACAGGGCATGCTGATTTGTCTAGATT

upper sequence: GLYMA08G40200.2 (Glycine max), 3'ss of exon 1
lower sequence: AT3G23325.1 (Arabidopsis thaliana), 3'ss of exon 1
gtagagattctattcccaatttccttgaaacgctctttccctctttccgttc--actcgctccgttatgaagttcaggctgcgattcaattttgtacttttcagtttctcaatctgtgacctatgtgaattggagttaattagggtttt------caaattcggtcccgaattgagtttgtgcgttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT
          |  || |  |    | ||||| ||  || | | |||  ||||  |         ||||  | ||       ||||| |  |  |      | |  |     | |  |   || |     ||| |     ||||| ||||      || ||         |  | | ||| |   |||| | ||||| ||||||||||||||||| ||||| |||||||||||||| ||||| || |||||||| || || ||||| ||||||| ||||||
--------gtttgtctctctcgattcgaaaccctagttacttttttttgttcttatctctaattttatacaatttct-tgacgattaagctaagcgtagctgaaatctgggaacaatttgctttagttcttgtaaa-ggttaggtttttaagcagcagatagttatgtaatctcacttttttgtttttgtgcagGCAAGTGATAGGTTTAACATAAATTCTCAGCTTGAGCATCTTCAAGCTAAGTATGTTGGTACAGGTCATGCAGATTTGAGCAGATT

upper sequence: GLYMA08G40200.2 (Glycine max), 3'ss of exon 1
lower sequence: AT4G14342.1 (Arabidopsis thaliana), 3'ss of exon 1
gtagagattctattcccaatttccttgaaacgctctttccctctttccgttcactcgctccgttatgaagttcaggctgcgattcaattttgtacttttcagtttctcaatctgtgacctatgtgaa-ttggagttaattagggttttcaaattcgg----tcccgaattgagtttgtgcgttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT
                                                                                     ||||  ||   |||   | |   ||    | |  ||  |||| | ||    |||| |    || |||||       |   |  ||| |||| |   | || | ||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| || ||||| |||||||  |||||
-------------------------------------------------------------------------------------aattaggtcgatttgtttcttataaagcat-atatagatgaaatcgggaacaatttg---ctttaaatttaacatcttttggtttgggtttttt--tcttttgcagGCAAGTGATAGGTTTAACATCAATTCTCAGCTTGAGCATCTTCAAGCTAAATATGTTGGAACCGGTCATGCTGATTTGAGTAGATT

upper sequence: GLYMA08G40200.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv05s0049g01230.t01 (Vitis vinifera), 3'ss of exon 1
gtagagattctattcccaatttccttgaaacgctctttccctctttccgttcactcgctccgttatgaagttcaggctgcgattcaattttgtacttttcagtttctcaat-ctgtgacctatgtgaattggagttaattagggtt-ttcaaattcggtcccgaattgagtttgtgcgttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT
                                                                                   |   | | ||| |||| | |||   ||| || |||  | ||| ||  | | |||   | | ||  |   | | | |    | |    | |||     ||  ||||||||||||||||||||| || || ||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||||| |||||
-----------------------------------------------------------------------------------tgtgtgtagtattttttatttttgaaatactttgaattgtgtcaa--gcacttatccatgtttacttgtaattgataaacattgtcatctgtaa---ttgcacagGCCAGTGATAGGTTTAATATTAACTCCCAGCTTGAGCATCTGCAAGCAAAATATGTTGGAACTGGTCATGCTGACTTGAATAGATT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298183625|gb|HO028838.1|HO028838
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTAATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|13790566|gb|BG653157.1|BG653157
EST:     ATTATATTGCAGCGATATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: ATTATATTGCAGCGA-ATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|193363683|gb|FK331323.1|FK331323
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|298198974|gb|HO042337.1|HO042337
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|193342487|gb|FK306103.1|FK306103
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|120496264|gb|EH224431.1|EH224431
EST:     CAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: CAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|7686032|gb|AW756680.1|AW756680
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|192303194|gb|FG997770.1|FG997770
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|193476699|gb|FK439546.1|FK439546
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|13563498|gb|BG551718.1|BG551718
EST:     CACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: CACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|207758371|gb|GD727297.1|GD727297
EST:     TTATATTTGTCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: TTATA-TTG-CAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|9259379|gb|BE347526.1|BE347526
EST:     ATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: ATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|6746775|gb|AW317231.1|AW317231
EST:     CCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: CCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|298176597|gb|HO023184.1|HO023184
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|120496411|gb|EH224578.1|EH224578
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|120533322|gb|EH261455.1|EH261455
EST:     TGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: TGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|7326786|gb|AW620584.1|AW620584
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|192315587|gb|FK007415.1|FK007415
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|27423463|gb|CA934983.1|CA934983
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|13252780|gb|BG363683.1|BG363683
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|58018107|gb|CX704849.1|CX704849
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|209707431|gb|BW670672.1|BW670672
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|209726747|gb|BW672474.1|BW672474
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|298185073|gb|HO030286.1|HO030286
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|16348314|gb|BI973909.1|BI973909
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|6482125|gb|AW201396.1|AW201396
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|298186827|gb|HO033926.1|HO033926
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|151409099|gb|EV278907.1|EV278907
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|208116492|gb|GD920431.1|GD920431
EST:     AATTATATTGCAGCGAATCGCACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|207827661|gb|GD800814.1|GD800814
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|213595698|gb|DB962470.1|DB962470
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|58024844|gb|CX711585.1|CX711585
EST:     ATTATA-TGCNAGCGAATCACACACACTTTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: ATTATATTGC-AGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|151399159|gb|EV269030.1|EV269030
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|151395682|gb|EV265559.1|EV265559
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|18039091|gb|BM307385.1|BM307385
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|7686191|gb|AW756839.1|AW756839
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
EST: gi|38192832|gb|CF922038.1|CF922038
EST:     AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAG                         GCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA
genomic: AATTATATTGCAGCGAATCACACACACTCTGAACAACGCCCACCATGCAGgtagagattc ... ttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttaattagggttttcaaattcggtcccgaattgagtttgtgcgttttatacagGCCAGTGATAGGTTTAACATCAATTCCCAGCTTGAGCATCTCCAAGCCAAATATGTTGGAACTGGCCATGCCGATTTGAACAGATT
 agttaat  putative branch site (score: 4)
            ttttcaaatt  TA-rich tract