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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtgtaccttcagtttctcccttgttttaagtttacgatggcaaaaaatggaagcccttgctggaacctttatgatgtcatcttttgactctgaatgcagATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAGTTGCTCTCAAACACTCTTTATTACAAACGGTTCTTTCCTTATTATGCTT

Basic information

species Glycine max
transcript GLYMA08G39420.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G39420.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv15s0048g00900.t01 (Vitis vinifera), 3'ss of exon 3
tgtgtaccttcagtttctcccttgttttaagtttacgatggcaaaa--aatggaagcccttgctggaacctttat--gatgtcatcttttgactctgaatgcagATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAGTTGCTCTCAAACACTCTTTATTACAAACGGTTCTTTCCTTATTATGCTT
      | |||| |   |  | |     || | ||     | || |  |||| ||   ||   ||   |||||||    | | || |  ||| | | | | ||||| ||||||||||| ||||||||||| |||||||||||||| ||||||||  ||||||| ||||| || || || ||||| ||||| ||||||||| |||
cacaatctttcattgcttggcatccaaaaattgtaaagatgtaatatgaatgaaatgtctcattg---cctttatttatttttatttcctgatt-taattacagATCTATCAGCATCAGCACAACAAGCAGATGAGTTGCCCTGCAATGGCTCAACTGCTCTCCAACACCCTCTACTATAAACGTTTCTTCCCTTATTATTCTT

upper sequence: GLYMA08G39420.2 (Glycine max), 3'ss of exon 1
lower sequence: PP1S197_22V6.2 (Physcomitrella patens), 3'ss of exon 4
tgtgtacc-ttcagtttctcccttgttttaagtttacgatggcaaaaaatggaagcccttgctggaacctttatgatgtcatcttttgactc-tgaatgcagATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAGTTGCTCTCAAACACTCTTTATTACAAACGGTTCTTTCCTTATTATGCTT
 ||  |   | ||| | ||| | ||||       | |  | |       | ||     | || |  |     |   ||     ||||   || || ||| ||||||||||||| || || |||||||| ||||| || || || ||||| ||  |||| ||||| || ||||| ||||| || |||||||| ||||| || |
-gtacagaatccagatactcgcgtgtt-----ggtgcattagtcgcttgtagagtaattagcagacattaagaaactgaagcattttccttcatgtatgtagATTTATCAGCACCAGCATAACAAGCAGATGAGCTGTCCAGCTATGGCACAACTGCTTTCAAATACACTTTACTACAAGCGATTCTTTCCCTATTACGCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatggaagcccttgctggaacctttatgatgtcatcttttgactctgaatgcagATTTATCAGCATCAACACAACAAGCAAATGAGTTGCCCTGCGATGGCTCAGTTGCTCTCAAACACTCTTTATTACAAACGGTTCTTTCCTTATTATGCTT
                                     ttttgac  putative branch site (score: 3)
                       tttatgat  TA-rich tract