Sequence
atgc intronic sequence ATGC exonic sequencegtaaggttaccctttctctctctatctctaaaagagtatgtattattcaattttttcattcattcgtttatttgttttttattttcttcgttttttgtagATCATGTGTTGCGATTGCTGGAGCAGATTACTGCGTTATCGCCGCAGATACGAGAATGTCCACCGGTTACAACATCCTCACTCGCGATTACTCCAAAATC
Basic information
species | Glycine max |
transcript | GLYMA08G39420.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G39420.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G60820.3 (Arabidopsis thaliana), 3'ss of exon 1
--------------------------------------gtaaggttaccctttctctctctatctctaaaagagtatgtattattcaattttttcattcattcgtttatttgttttttattttcttcgttttttgtagATCATGTGTTGCGATTGCTGGAGCAGATTACTGCGTTATCGCCGCAGATACGAGAATGTCCACCGGTTACAACATCCTCACTCGCGATTACTCCAAAATC
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gtacggatcgtgtgacctttaatcaacctgctgggtttcttcgcttagtgtctttcttctttattctgatttgctat---ctgggcgattgtgttacg-attcacttactgtgaatttaatcgttgtgtgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATACTCGGATGTCTACTGGTTACAGTATTCTTAGTCGCGATTACTCCAAAATC
upper sequence: GLYMA08G39420.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv15s0048g00900.t01 (Vitis vinifera), 3'ss of exon 1
-----------gtaaggttaccctttctct-ctctatctctaaaagagtatgtattattcaatttttt----cattcattcgtttatttgtttt-ttattttcttcgttt-----tttgtagATCATGTGTTGCGATTGCTGGAGCAGATTACTGCGTTATCGCCGCAGATACGAGAATGTCCACCGGTTACAACATCCTCACTCGCGATTACTCCAAAATC
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gtactctctttctaaactttctctctctagactttatcccttataatgtatatatcgattaattgattgtgatattcgatggttgaatgatgatgttgttttcgtgatatatgtatttgcagATCTTGTGTTGCAATTGCAGGTGCCGATTACTGCGTCATCGCAGCCGATACTCGGATGTCGACCGGCTACAATATCCTCACTCGCGATTACTCTAAAATC
upper sequence: GLYMA08G39420.1 (Glycine max), 3'ss of exon 1
lower sequence: PP1S54_196V6.2 (Physcomitrella patens), 3'ss of exon 2
----------------------------------------------------------------gtaaggttaccctttctct-ctctatctctaaaagagtatgtattattcaat--tttttcattcattcgttt--atttgttttttattttcttcgttttt-tgtagATCATGTGTTGCGATTGCTGGAGCAGATTACTGCGTTATCGCCGCAGATACGAGAATGTCCACCGGTTACAACATCCTCACTCGCGATTACTCCAAAATC
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gtaacttttctgtcatgctcgcaatagacctcttcggaagctgaagacggtgtgcaaacactgattatgcctgtggtctttcaattttttctcggttatattacttcgcgctccgtagcctatcgatcaagcatatgtatttgaatgttattgtgttggcggatatgcagGACATGTGTGGCTATAGCTGGAGCAGATTACTGCGTGATAGCAGCTGATACGAGGATGTCTACTGGGTTCAGTATTTTAACCCGGGATTATTCGAAAATTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298165462|gb|HO011511.1|HO011511EST: CCATGACGAAACAACATGCCAATTGGTCTCCTTACGATAACAACGGAGG ATCATGTGTTGCGATTGCTGGAGCAGATTACTGCGTTATCGCCGCAGATAC
genomic: CCATGACGAAACAACATGCCAATTGGTCTCCTTACGATAACAACGGAGGgtaaggttac ... ttttttgtagATCATGTGTTGCGATTGCTGGAGCAGATTACTGCGTTATCGCCGCAGATAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcaattttttcattcattcgtttatttgttttttattttcttcgttttttgtagATCATGTGTTGCGATTGCTGGAGCAGATTACTGCGTTATCGCCGCAGATACGAGAATGTCCACCGGTTACAACATCCTCACTCGCGATTACTCCAAAATC
ttcgtttatttgtttt CT-rich tract
ttttttcattcattcg TA-rich tract