1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cttttctgtttttcttatcgtctgcctagtttatgtgctcatttctcctcaatgaaatttcttatccaaagttgaagaactgttctttttggcataatagGTATCACTGTCATGGTGAGAGCTCAAACCAGCCACCCTTTGGATCCACTAACTGCTGCTGAAATATCAGTAGCTGTAGCGACCGTTCGAGCAGCTGGGGC
species | Glycine max |
transcript | GLYMA08G38990.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACCTTCATTTCCGCCATCGATTCTCCTCCCAAAACCGCTTCTGCCAAAG GTATCACTGTCATGGTGAGAGCTCAAACCAGCCACCCTTTEST: gi|192327405|gb|FK019592.1|FK019592
genomic: CACCTTCATTTCCGCCATCGATTCTCCTCCCAAAACCGCTTCTGCCAAAGgtttctttct ... ggcataatagGTATCACTGTCATGGTGAGAGCTCAAACCAGCCACCCTTT
EST: CATCTTCATTTCCGCCATCGATTCTCCTCCCAAAACCGCTTCTGCCAAAG GTATCACTGTCATGGTGAGAGCTCAAACCAGCCACCCTTTGGATCCACTAAEST: gi|213615152|gb|DB963364.1|DB963364
genomic: CACCTTCATTTCCGCCATCGATTCTCCTCCCAAAACCGCTTCTGCCAAAGgtttctttct ... ggcataatagGTATCACTGTCATGGTGAGAGCTCAAACCAGCCACCCTTTGGATCCACTAA
EST: CACCTTCATTTCCGCCATCGATTCTCCTCCCAAAACCGCTTCTGCCAAAG GTATCACTGTCATGGTGAGAGCTCAAACCAGCCACCCTTTGGATCCACTAA
genomic: CACCTTCATTTCCGCCATCGATTCTCCTCCCAAAACCGCTTCTGCCAAAGgtttctttct ... ggcataatagGTATCACTGTCATGGTGAGAGCTCAAACCAGCCACCCTTTGGATCCACTAA
tcctcaatgaaatttcttatccaaagttgaagaactgttctttttggcataatagGTATCACTGTCATGGTGAGAGCTCAAACCAGCCACCCTTTGGATCCACTAACTGCTGCTGAAATATCAGTAGCTGTAGCGACCGTTCGAGCAGCTGGGGC
ttctttttg CT-rich tract
aatgaaatttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttctgtttttcttatcgtctgcctagtttatgtgctcatttctcctcaatgaaatttcttatccaaagttgaagaactgttctttttggcataatagGTATCACTGTCATGGTGAGAGCTCAAACCAGCCACCCTTTGGATCCACTAACTGCTGCTGAAATATCAGTAGCTGTAGCGACCGTTCGAGCAGCTGGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- -ttctgtt
- - - - - - - - - - -ctgccta
- - - - - - - - - - - - - - - -tatgtgc
- - - - - - - - - - - - - - - - - - - - - -tctcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atccaaa