1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttttgaaggtgtgaccttggtatatagattttgactcaaattgacagtgtgcaatataagctcttatgggtgcttgcttttgtcattatttcttttgcagATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTGCTGAGAAGCTCTGGACTGGGCTTGTATCAGCAGGCTGGGGGGGTTGTAC
species | Glycine max |
transcript | GLYMA08G34520.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCAGCCATTCTCTGTCCCAAACTTTTCCACTGGCGTTTATCCGGTCGCC ATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTGEST: gi|298184016|gb|HO029229.1|HO029229
genomic: CCCAGCCATTCTCTGTCCCAAACTTTTCCACTGGCGTTTATCCGGTCGCCgtaagcattc ... tcttttgcagATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTG
EST: CCCAGCCATTCTCTGTCCCAAACTTTTCCACTGGCGTTTATCCGGTCGCC ATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTGEST: gi|120532190|gb|EH260323.1|EH260323
genomic: CCCAGCCATTCTCTGTCCCAAACTTTTCCACTGGCGTTTATCCGGTCGCCgtaagcattc ... tcttttgcagATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTG
EST: CCCAGCCATTCTCTGTCCCAAACTTTTCCACTGGCGTTTATCCGGTCGCC ATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTGEST: gi|298169953|gb|HO018577.1|HO018577
genomic: CCCAGCCATTCTCTGTCCCAAACTTTTCCACTGGCGTTTATCCGGTCGCCgtaagcattc ... tcttttgcagATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTG
EST: CCCAGCCATTCTCTGTCCCAAACTTTTCCACTGGCGTTTATCCGGTCGCC ATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTGEST: gi|151409621|gb|EV279429.1|EV279429
genomic: CCCAGCCATTCTCTGTCCCAAACTTTTCCACTGGCGTTTATCCGGTCGCCgtaagcattc ... tcttttgcagATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTG
EST: CCCAGCCATTCTCTGTCCCAAACTTTTCCACTGGCGTTTATCCGGTCGCC ATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTGEST: gi|192330084|gb|FK020900.1|FK020900
genomic: CCCAGCCATTCTCTGTCCCAAACTTTTCCACTGGCGTTTATCCGGTCGCCgtaagcattc ... tcttttgcagATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTG
EST: CCCAGCCATTCTCTGTCCCAAACTTTTCCACTGGCGTTTATCCGGTCGCC ATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTGEST: gi|120531812|gb|EH259945.1|EH259945
genomic: CCCAGCCATTCTCTGTCCCAAACTTTTCCACTGGCGTTTATCCGGTCGCCgtaagcattc ... tcttttgcagATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTG
EST: CCCAGCCATTCTCTGTCCCAAACTTTTCCACTGGCGTTTATCCGGTCGCC ATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTGEST: gi|192300410|gb|FG988827.1|FG988827
genomic: CCCAGCCATTCTCTGTCCCAAACTTTTCCACTGGCGTTTATCCGGTCGCCgtaagcattc ... tcttttgcagATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTG
EST: CCCAGCCATTCTCTGTCCCAAACTTTTCCACTGGCGTTTATCCGGTCGCC ATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTGEST: gi|20813108|gb|BQ297586.1|BQ297586
genomic: CCCAGCCATTCTCTGTCCCAAACTTTTCCACTGGCGTTTATCCGGTCGCCgtaagcattc ... tcttttgcagATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTG
EST: CCCAGCCATTCTCTGTCCCAAACTTTTCCACTGGCGTTTATCCGGTCGCC ATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTGEST: gi|21994816|gb|BQ786344.1|BQ786344
genomic: CCCAGCCATTCTCTGTCCCAAACTTTTCCACTGGCGTTTATCCGGTCGCCgtaagcattc ... tcttttgcagATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTG
EST: CCCAGCCATTCTCTGTCCCAAACTTTTCCACTGGCGTTTATCCGGTCGCC ATTACAAAATTATTCTCACTA-TTGTGTCCGGTAATGGTTTAGCATCAGTGEST: gi|120531982|gb|EH260115.1|EH260115
genomic: CCCAGCCATTCTCTGTCCCAAACTTTTCCACTGGCGTTTATCCGGTCGCCgtaagcattc ... tcttttgcagATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTG
EST: CCCAGCCATTCTCTGTCCCAAACTTTTCCACTGGCGTTTATCCGGTCGCC ATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTG
genomic: CCCAGCCATTCTCTGTCCCAAACTTTTCCACTGGCGTTTATCCGGTCGCCgtaagcattc ... tcttttgcagATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTG
agtgtgcaatataagctcttatgggtgcttgcttttgtcattatttcttttgcagATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTGCTGAGAAGCTCTGGACTGGGCTTGTATCAGCAGGCTGGGGGGGTTGTAC
tcattatttctttt CT-rich tract
ttttgtcattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgaaggtgtgaccttggtatatagattttgactcaaattgacagtgtgcaatataagctcttatgggtgcttgcttttgtcattatttcttttgcagATTACAAAATTATTCTCACAATTTGAGTCCGGTAATGGTTTAGCATCAGTGCTGAGAAGCTCTGGACTGGGCTTGTATCAGCAGGCTGGGGGGGTTGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - gtgtgac
- - - - - - - - - - - - - - - - -actcaaa
- - - - - - - - - - - - - - - - - - - - - - - gtgtgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgggtg