1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...agagagacagtgagtgagaattcttttttacatttttgttctaattttttcactcttaattgacaaattaccagaggcaccatttttggtttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATGCCAGAAACTAAGCTCGAGGCTAAAATGGTTGAAGCAATGCAGCGGAGGG
species | Glycine max |
transcript | GLYMA08G33830.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAG GCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATGEST: gi|208314269|gb|GE116965.1|GE116965
genomic: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAGgttcgttcat ... ttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
EST: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAG GCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATGEST: gi|298193020|gb|HO033465.1|HO033465
genomic: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAGgttcgttcat ... ttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
EST: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAG GCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATGEST: gi|298198185|gb|HO039724.1|HO039724
genomic: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAGgttcgttcat ... ttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
EST: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAG GCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATGEST: gi|193338758|gb|FK302201.1|FK302201
genomic: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAGgttcgttcat ... ttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
EST: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAG GCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATGEST: gi|298163700|gb|HO012433.1|HO012433
genomic: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAGgttcgttcat ... ttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
EST: CCCAAGGAGCTTGGGAACAAACTCCTGCCCCTTCTTCTCCTTGGTCATAG GCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGACGEST: gi|192305726|gb|FG995696.1|FG995696
genomic: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAGgttcgttcat ... ttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
EST: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAG GCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTATAAAGGGATCGATGEST: gi|22523171|gb|BU081982.1|BU081982
genomic: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAGgttcgttcat ... ttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
EST: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAG GCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATGEST: gi|298169069|gb|HO020429.1|HO020429
genomic: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAGgttcgttcat ... ttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
EST: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAG GCAATGGGAGGTGCACTGGGAAAGAGTGAATCACTTAGAAAGGGATCGATG
genomic: CCCAAGGAGCTTGGGAACAAACTCCTGCTCCTTCTTCTCCTTGGTCATAGgttcgttcat ... ttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATG
tttttcactcttaattgacaaattaccagaggcaccatttttggtttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATGCCAGAAACTAAGCTCGAGGCTAAAATGGTTGAAGCAATGCAGCGGAGGG
aattgac putative branch site (score: 3)
ttaattgacaaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagagacagtgagtgagaattcttttttacatttttgttctaattttttcactcttaattgacaaattaccagaggcaccatttttggtttattgatagGCAATGGGAGGTGCACTGGGAAAGAGTGAATCACCTAGAAAGGGATCGATGCCAGAAACTAAGCTCGAGGCTAAAATGGTTGAAGCAATGCAGCGGAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - tgagtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaccat