1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttcccttcctcatgctaattaatagttttaacaaatattatgaaacctgaacttctgctctaatgttctgtcacacaattaatgttgatcactgtttcagTCTCGAGAAAGGAGTTGAACTGGATCACCACTGGGTTGAGTTTGATGATGTTCGATATCATATTCAG
species | Glycine max |
transcript | GLYMA08G32790.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGTCTCATTCAAGATTCCTGCTCCAGACCTTGTTGAATCGGGCCCAAAA TCTCGAGAAAGGAGTTGAACTGGATCACCACTGGGTTGAGTTTGATGATGTEST: gi|209701869|gb|BW670510.1|BW670510
genomic: CAGTCTCATTCAAGATTCCTGCTCCAGACCTTGTTGAATCGGGCCCAAAAgtgcgttctt ... actgtttcagTCTCGAGAAAGGAGTTGAACTGGATCACCACTGGGTTGAGTTTGATGATGT
EST: CAGTCTCATTCAAGATTCCTGCTCCAGACCTTGTTGAATCGGGCCCAAAA TCTCGAGAAAGGAGTTGAACTGGATCACCACTGGGTTGAGTTTGATGATGTEST: gi|16105999|gb|BI893739.1|BI893739
genomic: CAGTCTCATTCAAGATTCCTGCTCCAGACCTTGTTGAATCGGGCCCAAAAgtgcgttctt ... actgtttcagTCTCGAGAAAGGAGTTGAACTGGATCACCACTGGGTTGAGTTTGATGATGT
EST: CAGTCTCATTCAAGATTCCTGCTCCAGACCTTGTTGAATCGGGCCCAAAA TCTCGAGAAAGGAGTTGAACTGGATCACCACTGGGTTGAGTTTGATGATGTEST: gi|19934903|gb|BQ079933.1|BQ079933
genomic: CAGTCTCATTCAAGATTCCTGCTCCAGACCTTGTTGAATCGGGCCCAAAAgtgcgttctt ... actgtttcagTCTCGAGAAAGGAGTTGAACTGGATCACCACTGGGTTGAGTTTGATGATGT
EST: CAGTCTCATTCAAGATTCCTGCTCCAGACCTTGTTGAATCGGGCCCAAAA TCTCGAGAAAGGAGTTGAACTGGATCACCACTGGGTTGAGTTTGATGATGTEST: gi|11413514|gb|BF425525.1|BF425525
genomic: CAGTCTCATTCAAGATTCCTGCTCCAGACCTTGTTGAATCGGGCCCAAAAgtgcgttctt ... actgtttcagTCTCGAGAAAGGAGTTGAACTGGATCACCACTGGGTTGAGTTTGATGATGT
EST: CAGTCTCATTCAAGATTCCTGCTCCAGACCTTGTTGAATCGGGCCCAAAA TCTCGAGAAAGGAGTTGAACTGGATCACCACTGGGTTGAGTTTGATGATGTEST: gi|27426707|gb|CA938227.1|CA938227
genomic: CAGTCTCATTCAAGATTCCTGCTCCAGACCTTGTTGAATCGGGCCCAAAAgtgcgttctt ... actgtttcagTCTCGAGAAAGGAGTTGAACTGGATCACCACTGGGTTGAGTTTGATGATGT
EST: CAGTCTCATTCAAGATTCCTGCTCCAGACCTTGTTGAATCGGGCCCAAAA TCTCGAGAAAGGAGTTGAACTGGATCACCACTGGGTTGAGTTTGATGATGT
genomic: CAGTCTCATTCAAGATTCCTGCTCCAGACCTTGTTGAATCGGGCCCAAAAgtgcgttctt ... actgtttcagTCTCGAGAAAGGAGTTGAACTGGATCACCACTGGGTTGAGTTTGATGATGT
cctgaacttctgctctaatgttctgtcacacaattaatgttgatcactgtttcagTCTCGAGAAAGGAGTTGAACTGGATCACCACTGGGTTGAGTTTGATGATGTTCGATATCATATTCAG
ctgtttc CT-rich tract
aattaatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcccttcctcatgctaattaatagttttaacaaatattatgaaacctgaacttctgctctaatgttctgtcacacaattaatgttgatcactgtttcagTCTCGAGAAAGGAGTTGAACTGGATCACCACTGGGTTGAGTTTGATGATGTTCGATATCATATTCAG
- - cttcctc
- - - - - - - - - - - - - - - - - - - - - - acctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgat