1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgcttcatacttctctcattatgtttctaccatattctgttctttctgaactacagtaattagtctgtaatatttgattaattgtggatattatttacagCTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGAAAAGTTCTAAAAGATG
species | Glycine max |
transcript | GLYMA08G32090.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGACTCTCAAGGGCACGCACTTCGAAATTGAAGTGAACCCTTCGGACACG CTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATEST: gi|193463621|gb|FK426929.1|FK426929
genomic: AGACTCTCAAGGGCACGCACTTCGAAATTGAAGTGAACCCTTCGGACACGgtttgccccc ... ttatttacagCTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTAT
EST: AGACTCTCAAGGGCACGCACTTCGAAATTGAAGTGAACCCTTCGGACACG CTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATEST: gi|151408744|gb|EV278552.1|EV278552
genomic: AGACTCTCAAGGGCACGCACTTCGAAATTGAAGTGAACCCTTCGGACACGgtttgccccc ... ttatttacagCTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTAT
EST: AGACTCTCAAGGGCACGCACTTCGAAATTGAAGTGAACCCTTCGGACACG CTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTGTEST: gi|207766428|gb|GD736516.1|GD736516
genomic: AGACTCTCAAGGGCACGCACTTCGAAATTGAAGTGAACCCTTCGGACACGgtttgccccc ... ttatttacagCTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTAT
EST: AGACTCTCAAGGGCACGCACTTCGAAATTGAAGTGAACCCTTCGGACACG CTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTAT
genomic: AGACTCTCAAGGGCACGCACTTCGAAATTGAAGTGAACCCTTCGGACACGgtttgccccc ... ttatttacagCTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTAT
ctgaactacagtaattagtctgtaatatttgattaattgtggatattatttacagCTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGAAAAGTTCTAAAAGATG
gattaat putative branch site (score: 3)
taatatttgattaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcttcatacttctctcattatgtttctaccatattctgttctttctgaactacagtaattagtctgtaatatttgattaattgtggatattatttacagCTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGAAAAGTTCTAAAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG