Sequence
atgc intronic sequence ATGC exonic sequencegtaactccctaaccactaattcattaaatttttgaaccatcttctgaactgattcattctgtttgtagGCTTTATTATGCTAAAATAGGGATTGGAACTCCTCCGAAGAATTACTATTTACAAGTGGACACTGGCAGTGATATTATGTGGGTAAATTGCATTCAGTGC
Basic information
species | Glycine max |
transcript | GLYMA08G29040.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G29040.1 (Glycine max), 3'ss of exon 1
lower sequence: AT1G05840.1 (Arabidopsis thaliana), 3'ss of exon 1
--------------------------------------------------------------------------------gtaactccctaaccactaattcattaa-atttttgaaccatcttctgaa-------ctgattcattctgtttgt-agGCTTTATTATGCTAAAATAGGGATTGGAACTCCTCCGAAGAATTACTATTTACAAGTGGACACTGGCAGTGATATTATGTGGGTAAATTGCATTCAGTGC
| | | || | |||| | | |||||||| | ||| ||| |||||| | | | | |||||||||||||| ||||| || |||||||| ||| | |||| || ||| | ||||| ||||| || ||||||||||||||||| || ||||| ||||||
gtcagtttcagattcctctaaagagttgttattgtttctttagcgtctctgatcactgctgatttcgagccttttgagaggaatttatggaatctctaaaaagctgagatttttgagttaacttgcagtgatctctctgtttcattgtttatctcagGCTTTATTATGCAAAAATTGGAATTGGAACACCTGCTAAGAGCTATTATGTTCAAGTCGACACAGGGAGTGATATTATGTGGGTTAACTGCATCCAGTGC
upper sequence: GLYMA08G29040.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv05s0062g01370.t01 (Vitis vinifera), 3'ss of exon 1
---------------------------gtaactccctaaccactaattcattaaatttttgaacc-atcttctgaactgattcattctg----tttgtagGCTTTATTATGCTAAAATAGGGATTGGAACTCCTCCGAAGAATTACTATTTACAAGTGGACACTGGCAGTGATATTATGTGGGTAAATTGCATTCAGTGC
|| || | | | | ||| | | | || | || || || ||||||||||||| ||||||||||| ||||||||||| || | | | | |||||| ||||||| || || || ||||| ||||||||||| ||||| |||||||||
gccaaacacctggaaaaccttgtaattgttacaagttcttgtatgacatgtgtgctttctatgcttactttgttaatatatgtttttcaaaattttgtagGCTTTACTATGCTAAAATTGGGATTGGAACACCGGCAAGGGACTACTATGTACAAGTAGATACAGGAAGTGACATTATGTGGGTTAATTGTATTCAGTGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cactaattcattaaatttttgaaccatcttctgaactgattcattctgtttgtagGCTTTATTATGCTAAAATAGGGATTGGAACTCCTCCGAAGAATTACTATTTACAAGTGGACACTGGCAGTGATATTATGTGGGTAAATTGCATTCAGTGC
ttcattct CT-rich tract
attcattaaatttttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaactccctaaccactaattcattaaatttttgaaccatcttctgaactgattcattctgtttgtagGCTTTATTATGCTAAAATAGGGATTGGAACTCCTCCGAAGAATTACTATTTACAAGTGGACACTGGCAGTGATATTATGTGGGTAAATTGCATTCAGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA