Sequence
atgc intronic sequence ATGC exonic sequence...tgtaatgttccttacttttattttgtttagcaaaattgcatctttcattttgttccttagtacaaccattcactaatcaattttttaaaaaacttctcagGTGGAATGGCCCATAGATGTATCATATAAAAGAGATGACTATTTTATGCGGTGGAGGTACCCAAGTTACAACTTCACCATGGCTGCTTTTTGGACAACTC
Basic information
species | Glycine max |
transcript | GLYMA08G28580.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6719428|gb|AW307075.1|AW307075EST: ACTCAGTTGGCAGAAATCAGATGCAGTCCATGATTTGCCTTTTATCAAGG GTGGAATGGCCCATAGATGTATCATATAAAAGAGATGACTATTTTATGCGG
genomic: ACTCAGTTGGCAGAAATCAGATGCAGTCCATGATTTGCCTTTTATCAAGGgtaagtctct ... aacttctcagGTGGAATGGCCCATAGATGTATCATATAAAAGAGATGACTATTTTATGCGG
EST:
gi|7588302|gb|AW704101.1|AW704101EST: ACTCAGTTGGCAGAAATCAGATGCAGTCCATGATTTGCCTTTTATCAAGG GTGGAATGGCCCATAGATGTATCATATAAAAGAGATGACTAT
genomic: ACTCAGTTGGCAGAAATCAGATGCAGTCCATGATTTGCCTTTTATCAAGGgtaagtctct ... aacttctcagGTGGAATGGCCCATAGATGTATCATATAAAAGAGATGACTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cattttgttccttagtacaaccattcactaatcaattttttaaaaaacttctcagGTGGAATGGCCCATAGATGTATCATATAAAAGAGATGACTATTTTATGCGGTGGAGGTACCCAAGTTACAACTTCACCATGGCTGCTTTTTGGACAACTC
cactaat putative branch site (score: 2)
cttctc putative PPT
attcactaatcaattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgtaatgttccttacttttattttgtttagcaaaattgcatctttcattttgttccttagtacaaccattcactaatcaattttttaaaaaacttctcagGTGGAATGGCCCATAGATGTATCATATAAAAGAGATGACTATTTTATGCGGTGGAGGTACCCAAGTTACAACTTCACCATGGCTGCTTTTTGGACAACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - gttcctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaccat