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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggctcgctcccctaaccctaaccctaaccctattctattctattctattccattctcatccgtcatactcttgaatttcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG

Basic information

species Glycine max
transcript GLYMA08G24000.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os06g39870.1 (Oryza sativa), 3'ss of exon 1
gtaggctc----gctcccctaacccta--accctaaccctattctattctattct---attccattctcatccgtcatactcttgaatttc-ttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG
||||| |      ||  | |     |   |  |   |  |    |||  | | ||   |||    | | ||    | | ||   || |||  |  | |||| |  | |||| | ||||| ||  || |  | || ||||| ||||| ||||||||||| |||||||| || |||||||||  ||| || || || |||
gtaggattctagactttctttgtattgggattcgtgctttgcggtataatgtgctaatatttttattttattttccctccttgcgattttgatgttgcagTTATAACGCTGGGGGAAGAGTTGAAGGTGCTCCATGAACCGGGCTCATATGTTGGTGAGGTTGTCAAGGTTATGGGCAAGTCCAAGGTTCTAGTGAAG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv09s0002g05800.t01 (Vitis vinifera), 3'ss of exon 1
-gtaggctcgctcccctaa---ccctaaccctaaccctattct-attctattctattccattctcatccgtcatactcttgaatttcttct-----acagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG
     | |  ||   ||||     |   |  |||    ||  | | | | ||| | |    |    |  |   | | | || || | || |     ||||||||||||||  | ||||| || || ||| | ||||| || || || ||||||||||||||||||||||| ||||| |||   || ||| | || |||
gaccagattactgttctaagaattcagccagtaataaaatcttgagtttcttcaacttgggtggtttatgatgttcacatgcatatatttttaatgacagTGAGGATGCTTAGAGAAGAGTTGCAACTTCTTCAGGAGCCTGGATCATATGTTGGTGAAGTTGTCAAAGTTATGGGGAAGTCAAAGGTCTTAGTTAAG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ28638 (Selaginella moellendorffii), 3'ss of exon 1
gtaggctcgctcccctaaccctaaccctaaccctattctattctattctattccattctcatccgtcatactcttgaatttcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG
                               || | || |   |  ||      |   | |||| | |   | ||   |   |  | |||| || ||||| || || ||  ||||||| ||||| || || || |||||||||||||| || |||||||| ||||| |||| |||||| ||||| |||
----------------------------gtaccgaatcgaaaat-ctcgcgagaagcgtgatccat-aggtttttatttccttcttccagTTAGAATGCTTCGAGAGGAGCTACAGCTATTGCAAGAGCCGGGATCTTATGTTGGTGAGGTCGTCAAAGTGATGGGAAAGAGCAAAGTTCTTGTGAAG

upper sequence: GLYMA08G24000.1 (Glycine max), 3'ss of exon 1
lower sequence: EFJ20576 (Selaginella moellendorffii), 3'ss of exon 1
gtaggctcgctcccctaaccctaaccctaaccctattctattctattctattccattctcatccgtcatactcttgaatttcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG
                               || | || |   |  ||      |   | |||| | |   | ||   |   |  | |||| || ||||| || || ||  ||||||| ||||| || || || || ||||||||||| || |||||||| ||||| |||| |||||| ||||| |||
----------------------------gtaccgaatcgaaaat-ctcgcgagaagcgtgatccat-aggtttttatttccttcttccagTTAGAATGCTTCGAGAGGAGCTACAGCTATTGCAAGAGCCGGGATCGTATGTTGGTGAGGTCGTCAAAGTGATGGGAAAGAGCAAAGTTCTTGTGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213593215|gb|DB969901.1|DB969901
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|17401413|gb|BM178195.1|BM178195
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|120493760|gb|EH221927.1|EH221927
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|16346043|gb|BI971638.1|BI971638
EST:     GAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|254349061|gb|GR860333.1|GR860333
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|213596302|gb|DB960231.1|DB960231
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|298171598|gb|HO021190.1|HO021190
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|18848674|gb|BM567798.1|BM567798
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|18730429|gb|BM525872.1|BM525872
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAA
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAA
EST: gi|9986673|gb|BE660781.1|BE660781
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|15661777|gb|BI699148.1|BI699148
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|192327448|gb|FK019605.1|FK019605
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|37995461|gb|CF807050.1|CF807050
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|120533815|gb|EH261948.1|EH261948
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|18040394|gb|BM308688.1|BM308688
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|26047693|gb|CA784406.1|CA784406
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|7028501|gb|AW458284.1|AW458284
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|21594964|gb|BQ610324.1|BQ610324
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|15813018|gb|BI785293.1|BI785293
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|254323845|gb|GR840378.1|GR840378
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|33390556|gb|CA853751.1|CA853751
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|26048149|gb|CA784723.1|CA784723
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|37994568|gb|CF806272.1|CF806272
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|213611680|gb|DB969068.1|DB969068
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|17964755|gb|BM271485.1|BM271485
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|6455002|gb|AW185685.1|AW185685
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|209706924|gb|BW661509.1|BW661509
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|151411634|gb|EV281445.1|EV281445
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|21678100|gb|BQ630451.1|BQ630451
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|254325633|gb|GR838514.1|GR838514
EST:     CTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: CTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|209717887|gb|BW666080.1|BW666080
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|15813544|gb|BI785819.1|BI785819
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|7684948|gb|AW755596.1|AW755596
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|7686556|gb|AW757204.1|AW757204
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|120531685|gb|EH259818.1|EH259818
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|6134230|gb|AW132623.1|AW132623
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|7145717|gb|AW507639.1|AW507639
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|21479815|gb|BQ576498.1|BQ576498
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|11413925|gb|BF426000.1|BF426000
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCNTTTTGCAGGAACCAGGCTCTTAT
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGC-TTTTGCAGGAACCAGGCTCTTAT
EST: gi|10235216|gb|BE804163.1|BE804163
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACAAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACACCTTTTGGAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
EST: gi|151394633|gb|EV264504.1|EV264504
EST:     GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGG                         TGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG
genomic: GCATAACCTCAACCGTCTTGAGGCTCAGAGAAACGAGCTCAATTCCAGGGgtaggctcgc ... tcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctattctattctattccattctcatccgtcatactcttgaatttcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG
                                           tttcttctac  CT-rich tract
        tattctatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaggctcgctcccctaaccctaaccctaaccctattctattctattctattccattctcatccgtcatactcttgaatttcttctacagTGAGGATGCTGCGCGAAGAATTACAGCTTTTGCAGGAACCAGGCTCTTATGTTGGTGAAGTTGTCAAAGTCATGGGCAAGAACAAAGTCCTTGTCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAC