1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tttgttttcagtgtaattttcttagtaaagcaaggatgagattttttatattttttttttggatttttggtattataacttatctgtgttcttaatacagGTTGAAATTTCTGAGCTGCAGAAAGAAGTGACTGATTTGAAAAATTTG
species | Glycine max |
transcript | GLYMA08G23730.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGTCTCTTTCGTTTTCTGGGACCGTCAAACTCTCGTCAGAGAGCACCAG GTTGAAATTTCTGAGCTGCAGAAAGAAGTGACTGATTTGAAAAATTTGEST: gi|193535965|gb|FK490857.1|FK490857
genomic: GTGTCTCTTTCGTTTTCTGGGACCGTCAAACTCTCGTCAGAGAGCACCAGgtatatctta ... cttaatacagGTTGAAATTTCTGAGCTGCAGAAAGAAGTGACTGATTTGAAAAATTTG
EST: GTGTCTCTTTCGTTTTCTGGGACCGTCAAACTCTCGTCAGAGAGCACCAG GTTGAAATTTCTGAGCTGCAGAAAGAAGTGACTGATTTGAAAAATTTG
genomic: GTGTCTCTTTCGTTTTCTGGGACCGTCAAACTCTCGTCAGAGAGCACCAGgtatatctta ... cttaatacagGTTGAAATTTCTGAGCTGCAGAAAGAAGTGACTGATTTGAAAAATTTG
ttatattttttttttggatttttggtattataacttatctgtgttcttaatacagGTTGAAATTTCTGAGCTGCAGAAAGAAGTGACTGATTTGAAAAATTTG
tgttctt CT-rich tract
ttttttttttggattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgttttcagtgtaattttcttagtaaagcaaggatgagattttttatattttttttttggatttttggtattataacttatctgtgttcttaatacagGTTGAAATTTCTGAGCTGCAGAAAGAAGTGACTGATTTGAAAAATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - ttcagtg
- - - - - - - - - - - - - aaagcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atctgtg