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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtattaaaataaagatcgaataatcttatattattcttcttgcgagcattcccagaagaagctcttatgggacatgttttcattcagaatagtatatagtttgatatggggagttattaatcattgattgtcgtgtgttgaattcagaagGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG

Basic information

species Glycine max
transcript GLYMA08G23380.4
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33389342|gb|CA852549.1|CA852549
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|33389342|gb|CA852549.1|CA852549
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|33389342|gb|CA852549.1|CA852549
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|33389342|gb|CA852549.1|CA852549
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|254318274|gb|GR832442.1|GR832442
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|254318274|gb|GR832442.1|GR832442
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|254318274|gb|GR832442.1|GR832442
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|254318274|gb|GR832442.1|GR832442
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|209709505|gb|BW681208.1|BW681208
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|209709505|gb|BW681208.1|BW681208
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|209709505|gb|BW681208.1|BW681208
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|254342046|gb|GR853183.1|GR853183
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|254342046|gb|GR853183.1|GR853183
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|254342046|gb|GR853183.1|GR853183
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|254342046|gb|GR853183.1|GR853183
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|213591513|gb|DB959943.1|DB959943
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|213591513|gb|DB959943.1|DB959943
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|213591513|gb|DB959943.1|DB959943
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|213591513|gb|DB959943.1|DB959943
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|192300003|gb|FG991835.1|FG991835
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|192300003|gb|FG991835.1|FG991835
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|192300003|gb|FG991835.1|FG991835
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|192300003|gb|FG991835.1|FG991835
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|37995904|gb|CF807493.1|CF807493
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|37995904|gb|CF807493.1|CF807493
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|37995904|gb|CF807493.1|CF807493
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|37995904|gb|CF807493.1|CF807493
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|213597388|gb|DB964405.1|DB964405
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|213597388|gb|DB964405.1|DB964405
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|213597388|gb|DB964405.1|DB964405
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|298168953|gb|HO020257.1|HO020257
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|298168953|gb|HO020257.1|HO020257
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|298168953|gb|HO020257.1|HO020257
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|298168953|gb|HO020257.1|HO020257
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|8283991|gb|BE021550.1|BE021550
EST:     CCTTGGATCTCANCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|8283991|gb|BE021550.1|BE021550
EST:     CCTTGGATCTCANCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|8283991|gb|BE021550.1|BE021550
EST:     CCTTGGATCTCANCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|8283991|gb|BE021550.1|BE021550
EST:     CCTTGGATCTCANCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|213594145|gb|DB963770.1|DB963770
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|213594145|gb|DB963770.1|DB963770
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|213594145|gb|DB963770.1|DB963770
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|213594145|gb|DB963770.1|DB963770
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|209706888|gb|BW661498.1|BW661498
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATG-AGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|209706888|gb|BW661498.1|BW661498
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATG-AGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|209706888|gb|BW661498.1|BW661498
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATG-AGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|209706888|gb|BW661498.1|BW661498
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATG-AGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|15200350|gb|BI424303.1|BI424303
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|15200350|gb|BI424303.1|BI424303
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|15200350|gb|BI424303.1|BI424303
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|15200350|gb|BI424303.1|BI424303
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|209699222|gb|BW664373.1|BW664373
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|209699222|gb|BW664373.1|BW664373
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|209699222|gb|BW664373.1|BW664373
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|11411497|gb|BF423508.1|BF423508
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|11411497|gb|BF423508.1|BF423508
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|11411497|gb|BF423508.1|BF423508
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-
EST: gi|11411497|gb|BF423508.1|BF423508
EST:     CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCT                         A
genomic: CCTTGGATCTCAGCATTAATCCTCGCAGAGTTCATGAAGAAGCTGTTCCTgtaagtatta ... aattcagaag-


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagtttgatatggggagttattaatcattgattgtcgtgtgttgaattcagaagGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG
                  ttattaatcattgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagtattaaaataaagatcgaataatcttatattattcttcttgcgagcattcccagaagaagctcttatgggacatgttttcattcagaatagtatatagtttgatatggggagttattaatcattgattgtcgtgtgttgaattcagaagGTGGTAGAAAGCAAGCTTTTCTCTTTGGGAATGCCCAAGTTTAACGTCGAAGAAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG