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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttactcttctaatcagtgccaacttggttagtttttataattcttcaaactgcaatttgtaatcttctattctaacagtgttcctttaacatggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGATTCTGACACGCATGATGACTTCAAGCCAGCTAATAAGCTTGAGAATTCTG

Basic information

species Glycine max
transcript GLYMA08G22430.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G22430.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv09s0002g06040.t01 (Vitis vinifera), 3'ss of exon 2
------ttactcttctaatcagtgccaacttggttagtttttataattcttcaaactgcaatttgtaatcttctattctaacagtgttcctttaacatggtgacagTTAAATGGGTTGTTTT------ATTGCACAAGATACTCGACTACTGTGTCAAATGATTCTGACACGCATGATGACTTCAAGCCAGCTAATAAGCTTGAGAATTCTG
            |  || |  |  | || | |    | ||   | || |||     | | | |  |||| ||   |  |||   | || | ||||  || |   || |   ||| |   |||      || | |  || ||||||||||||||| | |||||| ||||||| |||||||| |||||  |  ||||||||||||| |      
tgcttgaagtcatcttactttgctctaattggagatgattgcttgatgcttt--cttcccagtgataatatt---tgttaatgat-ttgcattaaattgttagtagGTTTCTGGATCCATTTTCCAAAATGGAATGAGGTACTCGACTACTGTGCCCAATGATCCTGACACACATGATGATTTCAAATCCACTAATAAGCTTGAAA------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10845845|gb|BF071195.1|BF071195
EST:     TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|19936158|gb|BQ080747.1|BQ080747
EST:     TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|7042125|gb|AW472019.1|AW472019
EST:     TGTCAAACATGTTCTTGAATGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|13790877|gb|BG653468.1|BG653468
EST:     TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|14992101|gb|BI317774.1|BI317774
EST:     TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|15000045|gb|BI320859.1|BI320859
EST:     TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|192326383|gb|FK015900.1|FK015900
EST:     TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|208291871|gb|GE090655.1|GE090655
EST:     TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|58023967|gb|CX710708.1|CX710708
EST:     TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|58017876|gb|CX704618.1|CX704618
EST:     TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|192325587|gb|FK019443.1|FK019443
EST:     TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|58024154|gb|CX710895.1|CX710895
EST:     TGTCAAACATGTTCTTGAAGAGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|151412930|gb|EV282742.1|EV282742
EST:     TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|10255366|gb|BE823132.1|BE823132
EST:     TGTCAAACATGTTCTTGAAGNNAATCGCAGCTCGTTCTCTCAGCAGACNN                         NTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: TGTCAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
EST: gi|58018211|gb|CX704953.1|CX704953
EST:     CAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCC                         TTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT
genomic: CAAACATGTTCTTGAAGGGAATCGCAGCTCGTTCTCTCAGCAGACCCgtaagatctt ... atggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaactgcaatttgtaatcttctattctaacagtgttcctttaacatggtgacagTTAAATGGGTTGTTTTATTGCACAAGATACTCGACTACTGTGTCAAATGATTCTGACACGCATGATGACTTCAAGCCAGCTAATAAGCTTGAGAATTCTG
        aatttgtaat  TA-rich tract