Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactctctctctctccttttttctcattcgctgtttcctaaatccgccagattaactcatcttatttcttcatcttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG

Basic information

species Glycine max
transcript GLYMA08G22410.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298190828|gb|HO032949.1|HO032949
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|192302311|gb|FG996649.1|FG996649
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCCACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|298175877|gb|HO015282.1|HO015282
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|6566901|gb|AW234533.1|AW234533
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|193308147|gb|FK273919.1|FK273919
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGGTGCTACTGCGATCAAAAAGAAGGTTGAGGA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGA
EST: gi|6724900|gb|AW309299.1|AW309299
EST:     TAGATTCGCCGCTCTCTCTCGCTCCTCCGGCTACTTCTCAACGCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|10237010|gb|BE805898.1|BE805898
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|298163725|gb|HO012458.1|HO012458
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|192297284|gb|FG992393.1|FG992393
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|17518872|gb|BM187914.1|BM187914
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|192325877|gb|FK016554.1|FK016554
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|298179041|gb|HO024776.1|HO024776
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|15813798|gb|BI786073.1|BI786073
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|4396994|gb|AI495991.1|AI495991
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|14011794|gb|BG726716.1|BG726716
EST:     GCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: GCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|192330663|gb|FK021968.1|FK021968
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|298198446|gb|HO039985.1|HO039985
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|16346699|gb|BI972294.1|BI972294
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|192297285|gb|FG992394.1|FG992394
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|192310382|gb|FK002262.1|FK002262
EST:     CAGATTCGCCGCTCTCTCTCACTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|4290153|gb|AI438028.1|AI438028
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|11275029|gb|BF325353.1|BF325353
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|192302312|gb|FG996650.1|FG996650
EST:     TCTCTCTCGCTCCTCCCGCCACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: TCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|15338027|gb|BI498683.1|BI498683
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|4288106|gb|AI441285.1|AI441285
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|7590619|gb|AW706367.1|AW706367
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|26058026|gb|CA800940.1|CA800940
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|4313609|gb|AI460728.1|AI460728
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|209715583|gb|BW674320.1|BW674320
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|7924358|gb|AW830384.1|AW830384
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|192324441|gb|FK015792.1|FK015792
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTG
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|298199512|gb|HO042875.1|HO042875
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|22540930|gb|BU090773.1|BU090773
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA
EST: gi|298185232|gb|HO030445.1|HO030445
EST:     CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCG                         AGGATGCTACTGCCATCAAAAAGAAGGTTGTGGATGTAATGCCAATCGCTA
genomic: CAGATTCGCCGCTCTCTCTCGCTCCTCCCGCTACTTCTCAACCCAGTCCGgtactctctc ... cttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgctgtttcctaaatccgccagattaactcatcttatttcttcatcttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG
                     gattaac  putative branch site (score: 2)
                           ctcatcttatttcttc  CT-rich tract
                              atcttattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactctctctctctccttttttctcattcgctgtttcctaaatccgccagattaactcatcttatttcttcatcttcttacagAGGATGCTACTGCCATCAAAAAGAAGGTTGAGGATGTAATGCCAATCGCTACTGGTCACGAGCGCGAGGAGCTTCAGGCTGAGCTCGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT