Sequence
atgc intronic sequence ATGC exonic sequence...tgttggttgtacttgtttgtatcattcatatgctaaactctagaagtttcactgtaaagaatgttccattaaatcaaccacaaaagatacagattttgagGTTGAGCTGCATTTGCTCCAATTGACGATGCTTCAGTTGTTCTTCATTACTAATTTTATGATAGGTCAGTTAGTTATTTAAGGGATAGAGGCCTGTATCT
Basic information
species | Glycine max |
transcript | GLYMA08G21280.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|20814221|gb|BQ298699.1|BQ298699EST: ACTGTAAAGAATGTTCCATTAAATCAACCACAAAAGATACAGATTTTGAG GTTGAGCTGCATTTGCTCCAATTGACGATGCTTCAGTTGTTCTTCATTACT
genomic: ACTGTAAAGAATGTTCCATTAAATCAACCACAAAAGATACAGATTTTGAGgttgagctgc ... agattttgagGTTGAGCTGCATTTGCTCCAATTGACGATGCTTCAGTTGTTCTTCATTACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtttcactgtaaagaatgttccattaaatcaaccacaaaagatacagattttgagGTTGAGCTGCATTTGCTCCAATTGACGATGCTTCAGTTGTTCTTCATTACTAATTTTATGATAGGTCAGTTAGTTATTTAAGGGATAGAGGCCTGTATCT
attaaatcaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgttggttgtacttgtttgtatcattcatatgctaaactctagaagtttcactgtaaagaatgttccattaaatcaaccacaaaagatacagattttgagGTTGAGCTGCATTTGCTCCAATTGACGATGCTTCAGTTGTTCTTCATTACTAATTTTATGATAGGTCAGTTAGTTATTTAAGGGATAGAGGCCTGTATCT
-gttggtt
- - - - - - -tgtttgt
- - - - - - - - - - - cattcat
- - - - - - - - - - - - - - - -gctaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - -gtaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccattaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacaaa