1 5' 3' | 2 5' 3' | 3 5' 3' |
...ccaaaaatacttaaggaactacatctaagttttgtcctttcgtaaactcattccatgcattaatttttctttgttttttcagcgtttttcttgttttcagTGCATATGTGCAAATGGAAATCCTGCTTACGTGACTATAAAGATAGACAGCCAGAAGTTTGCAAAAACCAGCCAAGAAAGCAACCGTGTGTGGAACCAAA
species | Glycine max |
transcript | GLYMA08G20710.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
actcattccatgcattaatttttctttgttttttcagcgtttttcttgttttcagTGCATATGTGCAAATGGAAATCCTGCTTACGTGACTATAAAGATAGACAGCCAGAAGTTTGCAAAAACCAGCCAAGAAAGCAACCGTGTGTGGAACCAAA
cattaat putative branch site (score: 3)
tttttctttgtttttt CT-rich tract
attaatttttctttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaaaaatacttaaggaactacatctaagttttgtcctttcgtaaactcattccatgcattaatttttctttgttttttcagcgtttttcttgttttcagTGCATATGTGCAAATGGAAATCCTGCTTACGTGACTATAAAGATAGACAGCCAGAAGTTTGCAAAAACCAGCCAAGAAAGCAACCGTGTGTGGAACCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - ccatgca