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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatacacttttttgctaacgtgcgatttcgattttctgttacgttatcgttaaaatgaattcatgaatttatgctatgattgattggtgtcagAGATCGAGCTTGACGTTCAGCGAGACGCTGTGCGCAGTGTTCATTCCGTTCATAGGAATAGTCGAAGCTTTGGTTTTCACATTCACTAGTTGCTTCGATT

Basic information

species Glycine max
transcript GLYMA08G20700.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193398977|gb|FK363877.1|FK363877
EST:     ACTCTGAACGATGAAATGAAATGGAGTTCCAAGATAAGCGTTTATCTCTG                         AGATCGAGCTTGACGTTCAGCGAGACGCTGTGCGCAGTGTTCATTCCGTTC
genomic: ACTCTGAACGATGAAATGAAATGGAGTTCCAAGATAAGCGTTTATCTCTGgtaatacact ... ttggtgtcagAGATCGAGCTTGACGTTCAGCGAGACGCTGTGCGCAGTGTTCATTCCGTTC
EST: gi|208045891|gb|GD844695.1|GD844695
EST:     ACTCTGAACGATGAAATGAAATGGAGTTCCAAGATAAGCGTTTATCTCTG                         AGATCGAGCTTGACGTTCAGCGAGACGCTGCGCGCAGTGTTCATTCCGTTC
genomic: ACTCTGAACGATGAAATGAAATGGAGTTCCAAGATAAGCGTTTATCTCTGgtaatacact ... ttggtgtcagAGATCGAGCTTGACGTTCAGCGAGACGCTGTGCGCAGTGTTCATTCCGTTC
EST: gi|213616508|gb|DB965555.1|DB965555
EST:     ACTCTGAACGATGAAATGAAATGGAGTTCCAAGATAAGCGTTTATCTCTG                         AGATCGAGCTTGACGTTCAGCGAGACGCTGTGCGCAGTGTTCATTCCGTTC
genomic: ACTCTGAACGATGAAATGAAATGGAGTTCCAAGATAAGCGTTTATCTCTGgtaatacact ... ttggtgtcagAGATCGAGCTTGACGTTCAGCGAGACGCTGTGCGCAGTGTTCATTCCGTTC
EST: gi|192329211|gb|FK020130.1|FK020130
EST:     GAACGATGAAATGAAATGGAGTTCCAAGATAAGCGTTTATCTCTG                         AGATCGAGCTTGACGTTCAGCGAGACGCTGTGCGCAGTGTTCATTCCGTTC
genomic: GAACGATGAAATGAAATGGAGTTCCAAGATAAGCGTTTATCTCTGgtaatacact ... ttggtgtcagAGATCGAGCTTGACGTTCAGCGAGACGCTGTGCGCAGTGTTCATTCCGTTC
EST: gi|151410451|gb|EV280266.1|EV280266
EST:     GAACGATGAAATGAAATGGAGTTCCAAGATAAGCGTTTATCTCTG                         AGATCGAGCTTGACGTTCAGCGAGACGCTGTGCGCAGTGTTCATTCCGTTC
genomic: GAACGATGAAATGAAATGGAGTTCCAAGATAAGCGTTTATCTCTGgtaatacact ... ttggtgtcagAGATCGAGCTTGACGTTCAGCGAGACGCTGTGCGCAGTGTTCATTCCGTTC
EST: gi|151396695|gb|EV266568.1|EV266568
EST:     ACTCTGAACGATGAAATGAAATGGAGTTCCAAGATAAGCGTTTATCTCTG                         AGATCGAGCTTGACGTTCAGCGAGACGCTGTGCGCAGTGTTCATTCCGTTC
genomic: ACTCTGAACGATGAAATGAAATGGAGTTCCAAGATAAGCGTTTATCTCTGgtaatacact ... ttggtgtcagAGATCGAGCTTGACGTTCAGCGAGACGCTGTGCGCAGTGTTCATTCCGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacgttatcgttaaaatgaattcatgaatttatgctatgattgattggtgtcagAGATCGAGCTTGACGTTCAGCGAGACGCTGTGCGCAGTGTTCATTCCGTTCATAGGAATAGTCGAAGCTTTGGTTTTCACATTCACTAGTTGCTTCGATT
                                       gattgat  putative branch site (score: 4)
           ttaaaatgaattcatg  TA-rich tract