Sequence
atgc intronic sequence ATGC exonic sequence...ctcttgtgagaaattagctactacccagccatgatgcgtctcaactggttggtagtgctgaactttaccttgaaaaattgttgttgttgctcattgacagGGAGAAGAACAGTTTTGTAGTGTTGACCATGAACATGATAATGTGAAGGGGTTCCAGGAATTGAGATTTGATGAAATAGATACTGCTGAGTGTGATTTTG
Basic information
species | Glycine max |
transcript | GLYMA08G19030.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151404216|gb|EV274026.1|EV274026EST: TATCCACAGAACAATCTTTGGATTGTTTACCTGCATTCAGCTCTGATAAG GGAGAAGAACAGTTTTGTAGTGTTGACCATGAACATGATAATGTGAAGGGG
genomic: TATCCACAGAACAATCTTTGGATTGTTTACCTGCATTCAGCTCTGATAAGgtataaggca ... tcattgacagGGAGAAGAACAGTTTTGTAGTGTTGACCATGAACATGATAATGTGAAGGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tggttggtagtgctgaactttaccttgaaaaattgttgttgttgctcattgacagGGAGAAGAACAGTTTTGTAGTGTTGACCATGAACATGATAATGTGAAGGGGTTCCAGGAATTGAGATTTGATGAAATAGATACTGCTGAGTGTGATTTTG
ttgaaaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctcttgtgagaaattagctactacccagccatgatgcgtctcaactggttggtagtgctgaactttaccttgaaaaattgttgttgttgctcattgacagGGAGAAGAACAGTTTTGTAGTGTTGACCATGAACATGATAATGTGAAGGGGTTCCAGGAATTGAGATTTGATGAAATAGATACTGCTGAGTGTGATTTTG
-tcttgtg
- - - - - - - - gctacta
- - - - - - - - - - - -cccagcc
- - - - - - - - - - - - - - - atgatgc
- - - - - - - - - - - - - - - - - - - - - - -tggttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgttgc